Evidence map›Paper›PMID 34083441›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel.

Pramod Kumar, Gisela D Cymes, Claudio Grosman

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

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  12. Cryo-EM structure of the four-subunitProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. Using deep-learning predictions of inter-residue distances for model validation.Acta crystallographica. Section D, Structural biology · 2022
    Article
  14. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pramod KumarDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0002-2094-6683
Gisela D CymesDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801.ORCID 0000-0002-4155-585X
Claudio GrosmanDepartment of Molecular and Integrative Physiology, University of Illinois at Urbana-Champaign, Urbana, IL 61801; grosman@illinois.edu.ORCID 0000-0001-8093-8362
University of Illinois Urbana-Champaign · US

Funding

NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Mechanisms of Neurotransmitter-Gated Ion ChannelsR01NS042169 · NINDS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 2003 to 2022
$6.6M
Mechanisms of Neurotransmitter-gated Ion ChannelsR56NS042169 · NINDS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI GROSMAN, CLAUDIO F · 2007 to 2007
$378k
NIGMS NIH HHS U24 GM129539NINDS NIH HHS R01 NS042169NINDS NIH HHS R56 NS042169
6 · The paper itself

Abstract

Although it has long been proposed that membrane proteins may contain tightly bound lipids, their identity, the structure of their binding sites, and their functional and structural relevance have remained elusive. To some extent, this is because tightly bound lipids are often located at the periphery of proteins, where the quality of density maps is usually poorer, and because they may be outcompeted by detergent molecules used during standard purification procedures. As a step toward characterizing natively bound lipids in the superfamily of pentameric ligand-gated ion channels (pLGICs), we applied single-particle cryogenic electron microscopy to fragments of native membrane obtained in the complete absence of detergent-solubilization steps. Because of the heterogeneous lipid composition of membranes in the secretory pathway of eukaryotic cells, we chose to study a bacterial pLGIC (ELIC) expressed in

Indexed as

Ion Channel GatingBacterial ProteinsEscherichia coliHEK293 CellsHumansLigand-Gated Ion ChannelsLipid BilayersProtein Structure, QuaternaryRecombinant ProteinsBacterial ProteinsLigand-Gated Ion ChannelsLipid BilayersRecombinant Proteinscardiolipincryo-EMCys-loop receptorsnicotinic receptorsstyrene–maleic acid nanodiscs

Identifiers

PMID34083441
PMCPMC8201805
OpenAlexW3165791799

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.