Evidence map›Paper›PMID 34082787›Full record

ArticleBiotechnology for biofuels2021

Extracellular riboflavin induces anaerobic biofilm formation in Shewanella oneidensis.

Miriam Edel, Gunnar Sturm, Katrin Sturm-Richter, Michael Wagner, Julia Novion Ducassou, Yohann Couté, Harald Horn, Johannes Gescher

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 54 citations in OpenAlex.

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  8. Spatially resolved charge-transfer kinetics at the quantum dot-microbe interface using fluorescence lifetime imaging microscopy.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  19. EngineeringSynthetic and systems biotechnology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Miriam EdelInstitute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Gunnar SturmInstitute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
Katrin Sturm-RichterInstitute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Michael WagnerInstitute for Biological Interfaces, Karlsruhe Institute of Technology (KIT), Eggenstein-Leopoldshafen, Germany.
Julia Novion DucassouUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, Grenoble, France.
Yohann CoutéUniversity Grenoble Alpes, CEA, INSERM, IRIG, BGE, Grenoble, France.
Harald HornEngler-Bunte-Institute, Water Chemistry and Water Technology, Karlsruhe Institute of Technology, Karlsruhe, Germany.
Johannes GescherInstitute for Applied Biosciences, Department of Applied Biology, Karlsruhe Institute of Technology, Karlsruhe, Germany. Johannes.gescher@kit.edu.ORCID http://orcid.org/0000-0002-1625-8810
Karlsruhe Institute of Technology · DEInserm · FR

Funding

Agence Nationale de la Recherche ANR-10-INBS-08-01Bundesministerium für Bildung und Forschung 031B0847A
6 · The paper itself

Abstract

backgroundSome microorganisms can respire with extracellular electron acceptors using an extended electron transport chain to the cell surface. This process can be applied in bioelectrochemical systems in which the organisms produce an electrical current by respiring with an anode as electron acceptor. These organisms apply flavin molecules as cofactors to facilitate one-electron transfer catalyzed by the terminal reductases and in some cases as endogenous electron shuttles.

resultsIn the model organism Shewanella oneidensis, riboflavin production and excretion trigger a specific biofilm formation response that is initiated at a specific threshold concentration, similar to canonical quorum-sensing molecules. Riboflavin-mediated messaging is based on the overexpression of the gene encoding the putrescine decarboxylase speC which leads to posttranscriptional overproduction of proteins involved in biofilm formation. Using a model of growth-dependent riboflavin production under batch and biofilm growth conditions, the number of cells necessary to produce the threshold concentration per time was deduced. Furthermore, our results indicate that specific retention of riboflavin in the biofilm matrix leads to localized concentrations, which by far exceed the necessary threshold value.

conclusionThis study describes a new quorum-sensing mechanism in S. oneidensis. Biofilm formation of S. oneidensis is induced by low concentrations of riboflavin resulting in an upregulation of the ornithine-decarboxylase speC. The results can be applied for the development of strains catalyzing increased current densities in bioelectrochemical systems.

Indexed as

BiofilmCurrent densityMicrobiologyQuorum sensingShewanella oneidensis

Identifiers

PMID34082787
PMCPMC8176591
OpenAlexW3165652774

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.