Evidence map›Paper›PMID 34080325›Full record

ReviewCancer medicine2021

The genomic landscape of teenage and young adult T-cell acute lymphoblastic leukemia.

Marcela B Mansur, Caroline L Furness, Sirintra Nakjang, Amir Enshaei, Donat Alpar, Sue M Colman, Lynne Minto, Julie Irving, Beth V Poole, Elda P Noronha and 7 more

Open access · goldAbstract readReview
In one paragraph

Review in Cancer medicine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. NovelCancer genomics & proteomics
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 4 countries.

Marcela B MansurCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Caroline L FurnessCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Sirintra NakjangWolfson Childhood Cancer Research Centre, Newcastle University Centre for Cancer, Newcastle upon Tyne, UK.
Amir EnshaeiWolfson Childhood Cancer Research Centre, Newcastle University Centre for Cancer, Newcastle upon Tyne, UK.
Donat AlparCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Sue M ColmanCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Lynne MintoWolfson Childhood Cancer Research Centre, Newcastle University Centre for Cancer, Newcastle upon Tyne, UK.
Julie IrvingWolfson Childhood Cancer Research Centre, Newcastle University Centre for Cancer, Newcastle upon Tyne, UK.
Beth V PooleWolfson Childhood Cancer Research Centre, Newcastle University Centre for Cancer, Newcastle upon Tyne, UK.
Elda P NoronhaPaediatric Haematology-Oncology Program, Research Centre, Instituto Nacional de Câncer, Rio de Janeiro, Brazil.
Suvi SavolaOncogenetics, MRC-Holland, Amsterdam, The Netherlands.
Sameena IqbalCentre for Haemato-Oncology, Barts Cancer Institute, London, UK.
John GribbenCentre for Haemato-Oncology, Barts Cancer Institute, London, UK.
Maria S Pombo-de-OliveiraPaediatric Haematology-Oncology Program, Research Centre, Instituto Nacional de Câncer, Rio de Janeiro, Brazil.ORCID 0000-0002-1507-004X
Tony M FordCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Mel F GreavesCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.
Frederik W van DelftCentre for Evolution and Cancer, The Institute of Cancer Research, London, UK.ORCID 0000-0002-3704-3720
Institute of Cancer Research · GBNewcastle University · GBInstituto Nacional de Câncer - INCA · BRQueen Mary University of London · GBMRC Holland (Netherlands) · NLSemmelweis University · HU

Funding

BloodwiseEU's Horizon 2020 Research and Innovation Program 739593FAPERJ E-26/110.712/2012FAPERJ E-26/202.577/2019Fundação do Cancer, SwissBridge FundHungarian Academy of Sciences BO/00320/18/5INCA, CNPq 301594/2015-5INCA, CNPq 310877/2019-5Kay Kendall Leukaemia Fund KKLF417Lady Tata Memorial Trust-LTMT International Award for Research in Leukaemia and the Ministry of Health, INCA-BrazilLeukaemia & Lymphoma ResearchNew National Excellence Program of the Ministry for Innovation and Technology ÚNKP-20-5-SE-22The European Hematology Association-EHA Partner Fellowship 2011/01The Hungarian National Research, Development and Innovation Office-NKFIH 119950The Hungarian National Research, Development and Innovation Office-NKFIH 134253The Institute of Cancer ResearchWellcome TrustWellcome Trust 105104/Z/14/Z
6 · The paper itself

Abstract

backgroundTreatment on risk adapted intensive pediatric protocols has improved outcome for teenagers and young adults (TYA) with T-cell acute lymphoblastic leukemia (T-ALL). Understanding the biology of disease in this age group and the genetic basis of relapse is a key goal as patients with relapsed/refractory disease have poor outcomes with conventional chemotherapy and novel molecular targets are required. This study examines the question of whether TYA T-ALL has a specific biological-molecular profile distinct from pediatric or adult T-ALL.

methodsGenomic characterization was undertaken of a retrospective discovery cohort of 80 patients aged 15-26 years with primary or relapsed T-ALL, using a combination of Genome-Wide Human SNP Array 6.0, targeted gene mutation and promoter methylation analyses. Findings were confirmed by MLPA, real-time quantitative PCR, and FISH. Whole Exome Sequencing was performed in 4 patients with matched presentation and relapse to model clonal evolution. A prevalence analysis was performed on a final data set of 1,792 individual cases to identify genetic lesions with age specific frequency patterns, including 972 pediatric (1-14 years), 439 TYA (15-24 years) and 381 adult (≥25 years) cases. These cases were extracted from 19 publications with comparable genomic data identified through a PubMed search.

resultsGenomic characterization of this large cohort of TYA T-ALL patients identified recurrent isochromosome 7q i(7q) in our discovery cohort (n = 3). Prevalence analysis did not identify any age specific genetic abnormalities. Genomic analysis of 6 pairs of matched presentation - relapsed T-ALL established that all relapses were clonally related to the initial leukemia. Whole exome sequencing analysis revealed recurrent, targetable, mutations disrupting NOTCH, PI3K/AKT/mTOR, FLT3, NRAS as well as drug metabolism pathways.

conclusionsAll genetic aberrations in TYA T-ALL occurred with an incidence similar or intermediate to that reported in the pediatric and adult literature, demonstrating that overall TYA T-ALL exhibits a transitional genomic profile. Analysis of matched presentation - relapse supported the hypothesis that relapse is driven by the Darwinian evolution of sub-clones associated with drug resistance (NT5C2 and TP53 mutations) and re-iterative mutation of known key T-ALL drivers, including NOTCH1.

Indexed as

Gene Expression ProfilingAdolescentAdultAge FactorsChromosomes, Human, Pair 7Clonal EvolutionExome SequencingHumansIsochromosomesMutationPolymorphism, Single NucleotidePrecursor T-Cell Lymphoblastic Leukemia-LymphomaRecurrenceRetrospective StudiesYoung Adultclonal selectiongenomicsrelapseT-ALLteenagers and young adults

Identifiers

PMID34080325
PMCPMC8290240
OpenAlexW3163958398

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.