Evidence map›Paper›PMID 34080151›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Suborganellar Localization of Mitochondrial Proteins and Transcripts in Human Cells.

Anna Smirnova, Ludovic Richert, Alexandre Smirnov, Yves Mély, Ivan Tarassov

Erratum issuedOpen access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Anna SmirnovaUMR 7156 - Molecular Genetics, Genomics, Microbiology (GMGM), University of Strasbourg/CNRS, Strasbourg, France.
Ludovic RichertUMR 7021 - Laboratory of Biophotonics and Pharmacology (LBP), University of Strasbourg/CNRS, Illkirch, France.
Alexandre SmirnovUMR 7156 - Molecular Genetics, Genomics, Microbiology (GMGM), University of Strasbourg/CNRS, Strasbourg, France.
Yves MélyUMR 7021 - Laboratory of Biophotonics and Pharmacology (LBP), University of Strasbourg/CNRS, Illkirch, France.
Ivan TarassovUMR 7156 - Molecular Genetics, Genomics, Microbiology (GMGM), University of Strasbourg/CNRS, Strasbourg, France. i.tarassov@unistra.fr.
Génétique Moléculaire Génomique Microbiologie · FRCentre National de la Recherche Scientifique · FRLaboratoire de Biophotonique et Pharmacologie · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondria have complex ultrastructure which includes continuous subcompartments, such as matrix, intermembrane space, and two membranes, as well as focal structures, such as nucleoids, RNA granules, and mitoribosomes. Comprehensive studies of the spatial distribution of proteins and RNAs inside the mitochondria are necessary to understand organellar gene expression processes and macromolecule targeting pathways. Here we give examples of distribution analysis of mitochondrial proteins and transcripts by conventional microscopy and the super-resolution technique 3D STORM. We provide detailed protocols and discuss limitations of immunolabeling of mitochondrial proteins and newly synthesized mitochondrial RNAs by bromouridine incorporation and single-molecule RNA FISH in hepatocarcinoma cells.

Indexed as

BromouracilHep G2 CellsHumansImage Processing, Computer-AssistedImmunohistochemistryIn Situ Hybridization, FluorescenceMicroscopy, ConfocalMitochondriaMitochondrial ProteinsRNA, MitochondrialSingle Molecule ImagingUridine5-bromouridineBromouracilMitochondrial ProteinsRNA, MitochondrialUridine3D STORMColocalization analysisConfocal microscopyImmunolabelingRNA in situ hybridizationSubmitochondrial ultrastructure

Identifiers

PMID34080151
OpenAlexW3165209517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.