Evidence map›Paper›PMID 34080067›Full record

ArticleJournal of cancer research and clinical oncology2021

High nuclear expression of HIF1α, synergizing with inactivation of LIMD1 and VHL, portray worst prognosis among the bladder cancer patients: association with arsenic prevalence.

Mukta Basu, Amvrin Chatterjee, Balarko Chakraborty, Essha Chatterjee, Sabnam Ghosh, Sudip Samadder, Dilip Kumar Pal, Anup Roy, Jayanta Chakrabarti, Amlan Ghosh and 1 more

RetractedOpen access · greenAbstract readRetracted Publication
In one paragraph

Article in Journal of cancer research and clinical oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Mukta BasuDepartment of Oncogene Regulation, Chittaranjan National Cancer Institute, 37 S. P. Mukherjee Road, Kolkata, West Bengal, 700026, India.
Amvrin ChatterjeeDepartment of Urology, IPGMER, SSKM, 244 A.J.C. Bose Road, Kolkata, 700020, India.
Balarko ChakrabortyDepartment of Oncogene Regulation, Chittaranjan National Cancer Institute, 37 S. P. Mukherjee Road, Kolkata, West Bengal, 700026, India.
Essha ChatterjeeNational Institute of Pharmaceutical Education and Research, Kukatpally Industrial Estate, Balanagar, Hyderabad, Telangana, 500037, India.
Sabnam GhoshDepartment of Life Science, Presidency University, 86/1, College Street, Kolkata, 700073, India.
Sudip SamadderDepartment of Oncogene Regulation, Chittaranjan National Cancer Institute, 37 S. P. Mukherjee Road, Kolkata, West Bengal, 700026, India.
Dilip Kumar PalDepartment of Urology, IPGMER, SSKM, 244 A.J.C. Bose Road, Kolkata, 700020, India.
Anup RoyNil Ratan Sarkar Medical College and Hospital, Kolkata, West Bengal, India.
Jayanta ChakrabartiDepartment of Oncogene Regulation, Chittaranjan National Cancer Institute, 37 S. P. Mukherjee Road, Kolkata, West Bengal, 700026, India.
Amlan GhoshDepartment of Life Science, Presidency University, 86/1, College Street, Kolkata, 700073, India.
Chinmay Kumar PandaDepartment of Oncogene Regulation, Chittaranjan National Cancer Institute, 37 S. P. Mukherjee Road, Kolkata, West Bengal, 700026, India. ckpanda.cnci@gmail.com.ORCID http://orcid.org/0000-0002-0854-6978
Chittaranjan National Cancer Institute · INBose Institute · INPresidency University · INNational Institute of Pharmaceutical Education and Research · INNil Ratan Sircar Medical College and Hospital · IN

Funding

Department of Biotechnology, Government of West Bengal 923/ (Sanc.)-BT (Estt.) RD 13/13FUniversity Grants Commission Sr. No. 2061430780, Ref No.: 22/06/2014(i)EU-V
6 · The paper itself

Abstract

purposeOur study was aimed to understand the importance of LIMD1-VHL-HIF1α pathway in development of bladder carcinoma (BlCa) in association with arsenic prevalence.

methodsAt first, the mRNA expression pattern of the genes of this pathway (LIMD1, VHL and HIF1α) was checked in GEO datasets and in our samples. Next, genetic and epigenetic profiling of LIMD1 and VHL was done in our sample pool, validated in T24 BlCa cell line. The results were next correlated with various clinico-pathological parameters.

resultsDifferential under-expression of LIMD1 and VHL genes was found in muscle-invasive BlCa (MIBC) in comparison to non-muscle-invasive BlCa (NMIBC). However, HIF1α protein, but mRNA, was found to be overexpressed among the MIBC samples; depicting the probability of HIF1α protein stabilization. Analysis of genetic and epigenetic profiles of LIMD1 and VHL exposed a frequent promoter methylation of LIMD1 gene in MIBC samples. Further, in-depth look into the results unveiled that the high nuclear expression of HIF1α was significantly correlated with genetic alterations of LIMD1, alone or in combination with VHL. Moreover, treating the T24 cells with a de-methylating agent (5-aza-2'-deoxycytidine) re-expressed the methylated LIMD1 and VHL genes, which in turn, reduced the HIF1α protein level significantly. Additionally, patients with high arsenic content (> 112 ng/g, AsH) seemed to have recurrent promoter methylation in LIMD1, as well as co-methylation/alteration of LIMD1 and VHL gene. Lastly, high nuclear expression of HIF1α in association with co-alteration of VHL and LIMD1 showed the worst overall survival (OS) among the patients.

conclusionTo conclude, MIBC samples portrayed higher alterations in VHL and LIMD1, thereby, stabilizing HIF1α protein and lowering the OS of patients.

Indexed as

AdultAgedAged, 80 and overArsenic PoisoningBiomarkers, TumorCarcinoma, Transitional CellCell Line, TumorCell NucleusComorbidityDatasets as TopicDNA MethylationFemaleGene Expression Regulation, NeoplasticGene SilencingHumansHypoxia-Inducible Factor 1, alpha SubunitBiomarkers, TumorHIF1A protein, humanHypoxia-Inducible Factor 1, alpha SubunitIntracellular Signaling Peptides and ProteinsLIMD1 protein, humanLIM Domain ProteinsVHL protein, humanVon Hippel-Lindau Tumor Suppressor ProteinBladder carcinomaHIF1αKaplan–Meier survival analysisLIMD1VHL

Identifiers

PMID34080067
PMCPMC11801887
OpenAlexW3164419010

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.