Evidence map›Paper›PMID 34079040›Full record

ArticleScientific reports2021

SOG1 transcription factor promotes the onset of endoreduplication under salinity stress in Arabidopsis.

Kalyan Mahapatra, Sujit Roy

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 27 citations in OpenAlex.

  1. The YPEL genePlant signaling & behavior · 2026
    Article
  2. Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Endoreplication-Why Are We Not Using Its Full Application Potential?International journal of molecular sciences · 2023
    Review
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Kalyan MahapatraDepartment of Botany, UGC Center for Advanced Studies, The University of Burdwan, Golapbag Campus, Burdwan, West Bengal, 713 104, India.
Sujit RoyDepartment of Botany, UGC Center for Advanced Studies, The University of Burdwan, Golapbag Campus, Burdwan, West Bengal, 713 104, India. sujitroy2006@gmail.com.
University of Burdwan · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As like in mammalian system, the DNA damage responsive cell cycle checkpoint functions play crucial role for maintenance of genome stability in plants through repairing of damages in DNA and induction of programmed cell death or endoreduplication by extensive regulation of progression of cell cycle. ATM and ATR (ATAXIA-TELANGIECTASIA-MUTATED and -RAD3-RELATED) function as sensor kinases and play key role in the transmission of DNA damage signals to the downstream components of cell cycle regulatory network. The plant-specific NAC domain family transcription factor SOG1 (SUPPRESSOR OF GAMMA RESPONSE 1) plays crucial role in transducing signals from both ATM and ATR in presence of double strand breaks (DSBs) in the genome and found to play crucial role in the regulation of key genes involved in cell cycle progression, DNA damage repair, endoreduplication and programmed cell death. Here we report that Arabidopsis exposed to high salinity shows generation of oxidative stress induced DSBs along with the concomitant induction of endoreduplication, displaying increased cell size and DNA ploidy level without any change in chromosome number. These responses were significantly prominent in SOG1 overexpression line than wild-type Arabidopsis, while sog1 mutant lines showed much compromised induction of endoreduplication under salinity stress. We have found that both ATM-SOG1 and ATR-SOG1 pathways are involved in the salinity mediated induction of endoreduplication. SOG1was found to promote G2-M phase arrest in Arabidopsis under salinity stress by downregulating the expression of the key cell cycle regulators, including CDKB1;1, CDKB2;1, and CYCB1;1, while upregulating the expression of WEE1 kinase, CCS52A and E2Fa, which act as important regulators for induction of endoreduplication. Our results suggest that Arabidopsis undergoes endoreduplicative cycle in response to salinity induced DSBs, showcasing an adaptive response in plants under salinity stress.

Indexed as

EndoreduplicationArabidopsisArabidopsis ProteinsAtaxia Telangiectasia Mutated ProteinsCell Cycle ProteinsCell SizeCyclin BCyclin-Dependent KinasesDNA, PlantE2F Transcription FactorsG2 Phase Cell Cycle CheckpointsGene Expression Regulation, PlantPlant CellsPolyploidyProtein Serine-Threonine KinasesSalt StressArabidopsis ProteinsAtaxia Telangiectasia Mutated ProteinsATM protein, ArabidopsisATR protein, ArabidopsisCDKA1 protein, ArabidopsisCDKB2;1 protein, ArabidopsisCell Cycle ProteinsCycB1 protein, ArabidopsisCyclin BCyclin-Dependent KinasesDNA, PlantE2Fa protein, ArabidopsisE2F Transcription FactorsFZR2 protein, ArabidopsisProtein Serine-Threonine KinasesSodium ChlorideSOG1 protein, ArabidopsisTranscription FactorsWEE1 protein, Arabidopsis

Identifiers

PMID34079040
PMCPMC8172935
OpenAlexW3165534061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.