Evidence map›Paper›PMID 34077537›Full record

ArticlePlant & cell physiology2021

Dynamic Rearrangement and Directional Migration of Tubular Vacuoles are Required for the Asymmetric Division of the Arabidopsis Zygote.

Hikari Matsumoto, Yusuke Kimata, Takumi Higaki, Tetsuya Higashiyama, Minako Ueda

Open access · bronzeAbstract readComparative Study
PubMed Publisher
In one paragraph

Article in Plant & cell physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. KymoTip: high-throughput characterization of tip-growth dynamics in plant cells.The Plant journal : for cell and molecular biology · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Hikari MatsumotoGraduate School of Life Sciences, Tohoku University, 6-3 Aoba, Aoba-ku, Sendai 980-8578, Japan.ORCID 0000-0001-8046-2608
Yusuke KimataGraduate School of Life Sciences, Tohoku University, 6-3 Aoba, Aoba-ku, Sendai 980-8578, Japan.
Takumi HigakiInternational Research Organization for Advanced Science and Technology (IROAST), Kumamoto University, 2-39-1 Kurokami, Chuo-ku, Kumamoto, Kumamoto 860-8555, Japan.ORCID 0000-0002-1379-3930
Tetsuya HigashiyamaGraduate School of Life Sciences, Tohoku University, 6-3 Aoba, Aoba-ku, Sendai 980-8578, Japan.ORCID 0000-0002-7346-360X
Minako UedaGraduate School of Life Sciences, Tohoku University, 6-3 Aoba, Aoba-ku, Sendai 980-8578, Japan.ORCID 0000-0002-6892-2744
Tohoku University · JPKumamoto University · JP

Funding

Japan Society for the Promotion of Science 19H04859, 19H05670 and 19H05676Japan Society for the Promotion of Science JP16H06465, JP16H06464 and JP16K21727Japan Society for the Promotion of Science JP18H05492 and JP16H06280Japan Society for the Promotion of Science JP19H03243, JP20H03289 and JP19K22421Japan Society for the Promotion of Science JP19J30006Japan Society for the Promotion of Science JP21K15117Suntory Rising Stars Encouragement Program in Life SciencesToray Science Foundation 20-6102
6 · The paper itself

Abstract

In most flowering plants, the asymmetric cell division of zygotes is the initial step that establishes the apical-basal axis. In the Arabidopsis zygote, vacuolar accumulation at the basal cell end is crucial to ensure zygotic division asymmetry. Despite the importance, it was unclear whether this polar vacuolar distribution was achieved by predominant biogenesis at the basal region or by directional movement after biogenesis. Here, we found that apical and basal vacuolar contents are dynamically exchanged via a tubular vacuolar network and the vacuoles gradually migrate toward the basal end. The mutant of a vacuolar membrane protein, SHOOT GRAVITROPISM2 (SGR2), failed to form tubular vacuoles, and the mutant of a putative vacuolar fusion factor, VESICLE TRANSPORT THROUGH INTERACTION WITH T-SOLUBLE N-ETHYLMALEIMIDE-SENSITIVE FUSION PROTEIN ATTACHMENT PROTEIN RECEPTORS (SNARES) 11 (VTI11), could not flexibly rearrange the vacuolar network. Both mutants failed to exchange the apical and basal vacuolar contents and to polarly migrate the vacuoles, resulting in a more symmetric division of zygotes. Additionally, we observed that in contrast to sgr2, the zygotic defects of vti11 were rescued by the pharmacological depletion of phosphatidylinositol 3-phosphate (PI3P), a distinct phospholipid in the vacuolar membrane. Thus, SGR2 and VTI11 have individual sites of action in zygotic vacuolar membrane processes. Further, a mutant of YODA (YDA) mitogen-activated protein kinase kinase kinase, a core component of the embryonic axis formation pathway, generated the proper vacuolar network; however, it failed to migrate the vacuoles toward the basal region, which suggests impaired directional cues. Overall, we conclude that SGR2- and VTI11-dependent vacuolar exchange and YDA-mediated directional migration are necessary to achieve polar vacuolar distribution in the zygote.

Indexed as

VacuolesZygoteArabidopsisCell DifferentiationCell DivisionCell MovementGenetic VariationGenotypeMutationArabidopsis thalianaLive-cell imagingVacuoleZygote

Identifiers

PMID34077537
OpenAlexW3164229531

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.