Evidence map›Paper›PMID 34077475›Full record

ArticlePloS one2021

Biochemical characterization of a recombinant acid phosphatase from Acinetobacter baumannii.

Elizabeth Smiley-Moreno, Douglas Smith, Jieh-Juen Yu, Phuong Cao, Bernard P Arulanandam, James P Chambers

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 57% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Elizabeth Smiley-MorenoSouth Texas Center for Emerging Infectious Disease and Department of Biology, The University of Texas at San Antonio, San Antonio, Texas, United States of America.
Douglas SmithSchool of Medicine, University College Dublin, Dublin, Ireland.
Jieh-Juen YuSouth Texas Center for Emerging Infectious Disease and Department of Biology, The University of Texas at San Antonio, San Antonio, Texas, United States of America.ORCID 0000-0001-8901-3366
Phuong CaoSouth Texas Center for Emerging Infectious Disease and Department of Biology, The University of Texas at San Antonio, San Antonio, Texas, United States of America.
Bernard P ArulanandamSouth Texas Center for Emerging Infectious Disease and Department of Biology, The University of Texas at San Antonio, San Antonio, Texas, United States of America.
James P ChambersSouth Texas Center for Emerging Infectious Disease and Department of Biology, The University of Texas at San Antonio, San Antonio, Texas, United States of America.
Texas Center for Infectious Disease · USUniversity College Dublin · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genomic sequence analysis of Acinetobacter baumannii revealed the presence of a putative Acid Phosphatase (AcpA; EC 3.1.3.2). A plasmid construct was made, and recombinant protein (rAcpA) was expressed in E. coli. PAGE analysis (carried out under denaturing/reducing conditions) of nickel-affinity purified protein revealed the presence of a near-homogeneous band of approximately 37 kDa. The identity of the 37 kDa species was verified as rAcpA by proteomic analysis with a molecular mass of 34.6 kDa from the deduced sequence. The dependence of substrate hydrolysis on pH was broad with an optimum observed at 6.0. Kinetic analysis revealed relatively high affinity for PNPP (Km = 90 μM) with Vmax, kcat, and Kcat/Km values of 19.2 pmoles s-1, 4.80 s-1(calculated on the basis of 37 kDa), and 5.30 x 104 M-1s-1, respectively. Sensitivity to a variety of reagents, i.e., detergents, reducing, and chelating agents as well as classic acid phosphatase inhibitors was examined in addition to assessment of hydrolysis of a number of phosphorylated compounds. Removal of phosphate from different phosphorylated compounds is supportive of broad, i.e., 'nonspecific' substrate specificity; although, the enzyme appears to prefer phosphotyrosine and/or peptides containing phosphotyrosine in comparison to serine and threonine. Examination of the primary sequence indicated the absence of signature sequences characteristic of Type A, B, and C nonspecific bacterial acid phosphatases.

Indexed as

Acid PhosphataseAcinetobacter baumanniiAmino Acid SequenceHydrogen-Ion ConcentrationHydrolysisKineticsMolecular WeightProteomeRecombinant ProteinsSequence HomologySubstrate SpecificityAcid PhosphataseProteomeRecombinant Proteins

Identifiers

PMID34077475
PMCPMC8172068
OpenAlexW3165271322

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.