Evidence map›Paper›PMID 34076595›Full record

ArticleActa crystallographica. Section D, Structural biology2021

A simple vapor-diffusion method enables protein crystallization inside the HARE serial crystallography chip.

Brenna Norton-Baker, Pedram Mehrabi, Juliane Boger, Robert Schönherr, David von Stetten, Hendrik Schikora, Ashley O Kwok, Rachel W Martin, R J Dwayne Miller, Lars Redecke and 1 more

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Structural biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Microfluidic Devices for High-Throughput In Situ Serial Crystallography.Advances in biochemical engineering/biotechnology · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. A 3D Printer in the Lab: Not Only a Toy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  9. Article
  10. Best practices for time-resolved serial synchrotron crystallography.Acta crystallographica. Section D, Structural biology · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Brenna Norton-BakerDepartment for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.
Pedram MehrabiDepartment for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.ORCID 0000-0003-3211-6959
Juliane BogerInstitute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.
Robert SchönherrInstitute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.ORCID 0000-0003-3850-4215
David von StettenEuropean Molecular Biology Laboratory, Hamburg Unit c/o Deutsches Elektronen-Synchrotron, 22607 Hamburg, Germany.ORCID 0000-0001-7906-9788
Hendrik SchikoraScientific Support Unit Machine Physics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.
Ashley O KwokDepartment of Chemistry, University of California, Irvine, CA 92697-2025, USA.ORCID 0000-0001-9361-4113
Rachel W MartinDepartment of Chemistry, University of California, Irvine, CA 92697-2025, USA.
R J Dwayne MillerDepartment of Physics, Universität Hamburg, Jungiusstrasse 9, 20355 Hamburg, Germany.
Lars RedeckeInstitute of Biochemistry, Center for Structural and Cell Biology in Medicine, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany.
Eike C SchulzDepartment for Atomically Resolved Dynamics, Max-Planck-Institute for Structure and Dynamics of Matter, Luruper Chaussee 149, 22761 Hamburg, Germany.ORCID 0000-0002-1685-8605

Funding

Solid-state NMR methods for investigating native and aggregated eye lens proteinsR01EY021514 · NEI · UNIVERSITY OF CALIFORNIA-IRVINE · PI MARTIN, RACHEL WAGNER · 2011 to 2022
$2.8M
Bundesministerium für Bildung und Forschung 05K18FLADeutsche Forschungsgemeinschaft 194651731Deutsche Forschungsgemeinschaft 451079909Deutsche Forschungsgemeinschaft 458246365Joachim Herz Stiftung Biomedical Physics of InfectionNEI NIH HHS R01 EY021514NIH HHS EY021514
6 · The paper itself

Abstract

Fixed-target serial crystallography has become an important method for the study of protein structure and dynamics at synchrotrons and X-ray free-electron lasers. However, sample homogeneity, consumption and the physical stress on samples remain major challenges for these high-throughput experiments, which depend on high-quality protein microcrystals. The batch crystallization procedures that are typically applied require time- and sample-intensive screening and optimization. Here, a simple protein crystallization method inside the features of the HARE serial crystallography chips is reported that circumvents batch crystallization and allows the direct transfer of canonical vapor-diffusion conditions to in-chip crystallization. Based on conventional hanging-drop vapor-diffusion experiments, the crystallization solution is distributed into the wells of the HARE chip and equilibrated against a reservoir with mother liquor. Using this simple method, high-quality microcrystals were generated with sufficient density for the structure determination of four different proteins. A new protein variant was crystallized using the protein concentrations encountered during canonical crystallization experiments, enabling structure determination from ∼55 µg of protein. Additionally, structure determination from intracellular crystals grown in insect cells cultured directly in the features of the HARE chips is demonstrated. In cellulo crystallization represents a comparatively unexplored space in crystallization, especially for proteins that are resistant to crystallization using conventional techniques, and eliminates any need for laborious protein purification. This in-chip technique avoids harvesting the sensitive crystals or any further physical handling of the crystal-containing cells. These proof-of-principle experiments indicate the potential of this method to become a simple alternative to batch crystallization approaches and also as a convenient extension to canonical crystallization screens.

Indexed as

Crystallography, X-RayProof of Concept StudyProteinsProteinsfixed-target crystallographyin cellulo crystallizationin vivo crystalsprotein crystallizationserial crystallography

Identifiers

PMID34076595
PMCPMC8171066

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.