Evidence map›Paper›PMID 34074795›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

CRISPR-based targeting of DNA methylation in

Basudev Ghoshal, Colette L Picard, Brandon Vong, Suhua Feng, Steven E Jacobsen

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
11.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 83 citations in OpenAlex.

  1. Review
  2. Review
  3. Epigenetic regulation and ROS signaling in plant stress adaptation: an integrated framework.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026
    Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. A Modular and Customizable CRISPR/Cas Toolkit for Epigenome Editing of Cis-regulatory Modules.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  10. Review
  11. Review
  12. Review
  13. Review
  14. Using targeted genome methylation for crop improvement.Journal of experimental botany · 2025
    Review
  15. CRISPR-Cas applications in agriculture and plant research.Nature reviews. Molecular cell biology · 2025
    Review
  16. Epigenetics in the modern era of crop improvements.Science China. Life sciences · 2025
    Review
  17. Harnessing neo-domestication of wild pigmented rice for enhanced nutrition and sustainable agriculture.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  18. Article
  19. Current genomics · 2025
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Basudev GhoshalDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.ORCID 0000-0003-1387-0139
Colette L PicardDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.ORCID 0000-0002-2177-2216
Brandon VongDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.ORCID 0000-0001-8278-1469
Suhua FengDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095.
Steven E JacobsenDepartment of Molecular, Cell and Developmental Biology, University of California, Los Angeles, CA 90095; jacobsen@ucla.edu.
University of California, Los Angeles · US

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
Epigenetic gene regulation in ArabidopsisR35GM130272 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JACOBSEN, STEVEN E · 2019 to 2023
$1.6M
Characterization of the function of gene body DNA methylationF32GM136115 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI PICARD, COLETTE LAFONTAINE · 2020 to 2022
$201k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA016042NIGMS NIH HHS F32 GM136115NIGMS NIH HHS R35 GM130272
6 · The paper itself

Abstract

CRISPR-based targeted modification of epigenetic marks such as DNA cytosine methylation is an important strategy to regulate the expression of genes and their associated phenotypes. Although plants have DNA methylation in all sequence contexts (CG, CHG, CHH, where H = A, T, C), methylation in the symmetric CG context is particularly important for gene silencing and is very efficiently maintained through mitotic and meiotic cell divisions. Tools that can directly add CG methylation to specific loci are therefore highly desirable but are currently lacking in plants. Here we have developed two CRISPR-based CG-specific targeted DNA methylation systems for plants using a variant of the bacterial CG-specific DNA methyltransferase MQ1 with reduced activity but high specificity. We demonstrate that the methylation added by MQ1 is highly target specific and can be heritably maintained in the absence of the effector. These tools should be valuable both in crop engineering and in plant genetic research.

Indexed as

ArabidopsisBacterial ProteinsCRISPR-Cas SystemsDNA-Cytosine MethylasesDNA MethylationPlants, Genetically ModifiedDNA, PlantTenericutesBacterial ProteinsDNA-Cytosine MethylasesDNA, PlantArabidopsisCRISPR-Cas9DNA methylationSunTag

Identifiers

PMID34074795
PMCPMC8201958
OpenAlexW3164684535

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.