Evidence map›Paper›PMID 34073840›Full record

ArticleCancers2021

Radiomic Based Machine Learning Performance for a Three Class Problem in Neuro-Oncology: Time to Test the Waters?

Sarv Priya, Yanan Liu, Caitlin Ward, Nam H Le, Neetu Soni, Ravishankar Pillenahalli Maheshwarappa, Varun Monga, Honghai Zhang, Milan Sonka, Girish Bathla

Abstract read
In one paragraph

Article in Cancers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Evaluating Autoencoders for Dimensionality Reduction of MRI-derived Radiomics and Classification of Malignant Brain Tumors.Scientific and statistical database management : International Conference, SSDBM ... : proceedings. International Conference on Scientific and Statistical Database Management · 2023
    Article
  9. Review
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Sarv PriyaDepartment of Radiology, University of Iowa Hospitals and Clinics, Iowa City, IA 52242, USA.
Yanan LiuCollege of Engineering, University of Iowa, Iowa City, IA 52242, USA.
Caitlin WardDepartment of Biostatistics, University of Iowa, Iowa City, IA 52242, USA.ORCID 0000-0002-0806-0222
Nam H LeCollege of Engineering, University of Iowa, Iowa City, IA 52242, USA.ORCID 0000-0003-2556-7612
Neetu SoniDepartment of Radiology, University of Iowa Hospitals and Clinics, Iowa City, IA 52242, USA.
Ravishankar Pillenahalli MaheshwarappaDepartment of Radiology, University of Iowa Hospitals and Clinics, Iowa City, IA 52242, USA.
Varun MongaDepartment of Medicine, University of Iowa Hospitals and Clinics, Iowa City, IA 52242, USA.ORCID 0000-0002-1185-5448
Honghai ZhangCollege of Engineering, University of Iowa, Iowa City, IA 52242, USA.
Milan SonkaCollege of Engineering, University of Iowa, Iowa City, IA 52242, USA.
Girish BathlaDepartment of Radiology, University of Iowa Hospitals and Clinics, Iowa City, IA 52242, USA.ORCID 0000-0003-3170-242X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Prior radiomics studies have focused on two-class brain tumor classification, which limits generalizability. The performance of radiomics in differentiating the three most common malignant brain tumors (glioblastoma (GBM), primary central nervous system lymphoma (PCNSL), and metastatic disease) is assessed; factors affecting the model performance and usefulness of a single sequence versus multiparametric MRI (MP-MRI) remain largely unaddressed. This retrospective study included 253 patients (120 metastatic (lung and brain), 40 PCNSL, and 93 GBM). Radiomic features were extracted for whole a tumor mask (enhancing plus necrotic) and an edema mask (first pipeline), as well as for separate enhancing and necrotic and edema masks (second pipeline). Model performance was evaluated using MP-MRI, individual sequences, and the T1 contrast enhanced (T1-CE) sequence without the edema mask across 45 model/feature selection combinations. The second pipeline showed significantly high performance across all combinations (Brier score: 0.311-0.325). GBRM fit using the full feature set from the T1-CE sequence was the best model. The majority of the top models were built using a full feature set and inbuilt feature selection. No significant difference was seen between the top-performing models for MP-MRI (AUC 0.910) and T1-CE sequence with (AUC 0.908) and without edema masks (AUC 0.894). T1-CE is the single best sequence with comparable performance to that of multiparametric MRI (MP-MRI). Model performance varies based on tumor subregion and the combination of model/feature selection methods.

Indexed as

CNS lymphomaglioblastomamachine learningmetastasesMRIradiomicstexture

Identifiers

PMID34073840
PMCPMC8197204

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.