Evidence map›Paper›PMID 34073392›Full record

ArticleMicroorganisms2021

Molecular Analysis of East African Lumpy Skin Disease Viruses Reveals a Mixed Isolate with Features of Both Vaccine and Field Isolates.

Tesfaye Rufael Chibssa, Melaku Sombo, Jacqueline Kasiiti Lichoti, Tajelser Idris Badri Adam, Yang Liu, Yazeed Abd Elraouf, Reingard Grabherr, Tirumala Bharani K Settypalli, Francisco J Berguido, Angelika Loitsch and 4 more

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 6 countries.

Tesfaye Rufael ChibssaAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.
Melaku SomboNational Animal Health Diagnostic and Investigation Centre (NAHDIC), Sebeta P.O. Box 04, Ethiopia.
Jacqueline Kasiiti LichotiDirectorate of Veterinary Services, Ministry of Agriculture, Livestock and Fisheries, Private Bag, Nairobi 00625, Kenya.
Tajelser Idris Badri AdamCentral Veterinary Research Laboratories, Animal Resources Research Corporation, Ministry of Livestock, Fisheries and Ranges, Khartoum P.O. Box 8067, Sudan.ORCID 0000-0002-5205-4268
Yang LiuAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.
Yazeed Abd ElraoufCentral Veterinary Research Laboratories, Animal Resources Research Corporation, Ministry of Livestock, Fisheries and Ranges, Khartoum P.O. Box 8067, Sudan.
Reingard GrabherrInstitute of Biotechnology, University of Natural Resources and Life Sciences (BOKU), Muthgasse 18, A-1190 Vienna, Austria.ORCID 0000-0002-4501-927X
Tirumala Bharani K SettypalliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.
Francisco J BerguidoAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.
Angelika LoitschAustrian Agency for Health and Food Safety (AGES), Spargelfeldstrasse 191, A-1220 Vienna, Austria.
Mesfin SahleNational Animal Health Diagnostic and Investigation Centre (NAHDIC), Sebeta P.O. Box 04, Ethiopia.
Giovanni CattoliAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.
Adama DialloUMR CIRAD INRA, Animal, Santé, Territoires, Risques et Ecosystèmes (ASTRE), CEDEX 05, 34398 Montpellier, France.
Charles Euloge LamienAnimal Production and Health Laboratory, Joint FAO/IAEA Division of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Friedenstrasse 1, A-2444 Seibersdorf, Austria.ORCID 0000-0003-1899-7614
International Atomic Energy Agency · ATAgricultural Research Corporation · SDAnkara University · TRAustrian Agency for Health and Food Safety · ATBOKU University · ATCentre de Coopération Internationale en Recherche Agronomique pour le Développement · FRMinistry of Agriculture Livestock and Fisheries · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lumpy skin disease (LSD), an economically significant disease in cattle caused by lumpy skin disease virus (LSDV), is endemic to nearly all of Africa. Since 2012, LSDV has emerged as a significant epizootic pathogen given its rapid spread into new geographical locations outside Africa, including the Middle East, Eastern Europe, and Asia. To assess the genetic diversity of LSDVs in East Africa, we sequenced and analyzed the RPO30 and GPCR genes of LSDV in twenty-two archive samples collected in Ethiopia, Kenya, and Sudan before the appearance of LSD in the Middle East and its incursion into Europe. We compared them to publicly available sequences of LSDVs from the same region and those collected elsewhere. The results showed that the East African field isolates in this study were remarkably similar to each other and to previously sequenced field isolates of LSDV for the RPO30 and GPCR genes. The only exception was LSDV Embu/B338/2011, a field virus collected in Kenya, which displayed mixed features between the LSDV Neethling vaccine and field isolates. LSDV Embu/B338/2011 had the same 12-nucleotide insertion found in LSDV Neethling and KS-1 vaccines. Further analysis of the partial EEV glycoprotein, B22R, RNA helicase, virion core protein, NTPase, and N1R/p28-like protein genes showed that LSDV Embu/B338/2011 differs from previously described LSDV variants carrying the 12-nucleotide insertion in the GPCR gene. These findings highlight the importance of the constant monitoring of genetic variation among LSDV isolates.

Indexed as

B22R geneEEV glycoproteinGPCR geneLSDVRPO30 gene

Identifiers

PMID34073392
PMCPMC8229927
OpenAlexW3164201172

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.