Evidence map›Paper›PMID 34072515›Full record

ArticleInternational journal of molecular sciences2021

DArTseq-Based High-Throughput SilicoDArT and SNP Markers Applied for Association Mapping of Genes Related to Maize Morphology.

Agnieszka Tomkowiak, Jan Bocianowski, Julia Spychała, Joanna Grynia, Aleksandra Sobiech, Przemysław Łukasz Kowalczewski

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genetic resources and breeding of maize forFrontiers in plant science · 2023
    Review
  6. Article
  7. Cis-element amplified polymorphism (CEAP), a novel promoter- and gene-targeted molecular marker of plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Agnieszka TomkowiakDepartment of Genetics and Plant Breeding, Poznań University of Life Sciences, 11 Dojazd St., 60-632 Poznań, Poland.ORCID 0000-0001-9516-8911
Jan BocianowskiDepartment of Mathematical and Statistical Methods, Poznań University of Life Sciences, 28 Wojska Polskiego St., 60-637 Poznań, Poland.ORCID 0000-0002-0102-0084
Julia SpychałaDepartment of Genetics and Plant Breeding, Poznań University of Life Sciences, 11 Dojazd St., 60-632 Poznań, Poland.
Joanna GryniaPoznań Plant Breeding Sp. z o. o., 5 Kasztanowa St., 63-004 Tulce, Poland.
Aleksandra SobiechDepartment of Genetics and Plant Breeding, Poznań University of Life Sciences, 11 Dojazd St., 60-632 Poznań, Poland.
Przemysław Łukasz KowalczewskiDepartment of Food Technology of Plant Origin, Poznań University of Life Sciences, 31 Wojska Polskiego St., 60-624 Poznań, Poland.ORCID 0000-0002-0153-4624
University of Life Sciences in Poznań · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Today, agricultural productivity is essential to meet the needs of a growing population, and is also a key tool in coping with climate change. Innovative plant breeding technologies such as molecular markers, phenotyping, genotyping, the CRISPR/Cas method and next-generation sequencing can help agriculture meet the challenges of the 21st century more effectively. Therefore, the aim of the research was to identify single-nucleotide polymorphisms (SNPs) and SilicoDArT markers related to select morphological features determining the yield in maize. The plant material consisted of ninety-four inbred lines of maize of various origins. These lines were phenotyped under field conditions. A total of 14 morphological features was analyzed. The DArTseq method was chosen for genotyping because this technique reduces the complexity of the genome by restriction enzyme digestion. Subsequently, short fragment sequencing was used. The choice of a combination of restrictases allowed the isolation of highly informative low copy fragments of the genome. Thanks to this method, 90% of the obtained DArTseq markers are complementary to the unique sequences of the genome. All the observed features were normally distributed. Analysis of variance indicated that the main effect of lines was statistically significant (

Indexed as

Chromosome MappingGenetic MarkersHigh-Throughput Nucleotide SequencingPolymorphism, Single NucleotideQuantitative Trait, HeritableGenome, PlantGenome-Wide Association StudyInbreedingPhylogenyPlant BreedingQuantitative Trait LociZea maysGenetic Markerscandidate gene association mappingDArTSeqgenome-wide association mappingmorphological featuresSNPZea mays L.

Identifiers

PMID34072515
PMCPMC8198497
OpenAlexW3165548604

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.