Evidence map›Paper›PMID 34071777›Full record

ArticleInternational journal of molecular sciences2021

Proteome Characterization of BALF Extracellular Vesicles in Idiopathic Pulmonary Fibrosis: Unveiling Undercover Molecular Pathways.

Enxhi Shaba, Claudia Landi, Alfonso Carleo, Lorenza Vantaggiato, Eugenio Paccagnini, Mariangela Gentile, Laura Bianchi, Pietro Lupetti, Elena Bargagli, Antje Prasse and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Enxhi ShabaDepartment of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy.ORCID 0000-0002-9561-2426
Claudia LandiFunctional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0003-0410-8038
Alfonso CarleoDepartment of Pulmonology, Medizinische Hochschule Hannover at Fraunhofer-Institut für Toxikologie und Experimentelle Medizin, 30625 Hannover, Germany.ORCID 0000-0002-2795-9583
Lorenza VantaggiatoFunctional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy.
Eugenio PaccagniniDepartment of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0002-9784-2057
Mariangela GentileDepartment of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0002-4928-4652
Laura BianchiFunctional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0001-9219-1227
Pietro LupettiDepartment of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0003-4316-9861
Elena BargagliRespiratory Diseases and Lung Transplantation, Department Internal and Specialist Medicine, University of Siena, Viale Bracci 16, 53100 Siena, Italy.ORCID 0000-0002-8351-3703
Antje PrasseDepartment of Pulmonology, Medizinische Hochschule Hannover at Fraunhofer-Institut für Toxikologie und Experimentelle Medizin, 30625 Hannover, Germany.
Luca BiniFunctional Proteomics Lab, Department of Life Sciences, University of Siena, 53100 Siena, Italy.ORCID 0000-0001-8951-2106
University of Siena · ITMedizinische Hochschule Hannover · DE

Funding

Regione Toscana B66J18000080002
6 · The paper itself

Abstract

In the longtime challenge of identifying specific, easily detectable and reliable biomarkers of IPF, BALF proteomics is providing interesting new insights into its pathogenesis. To the best of our knowledge, the present study is the first shotgun proteomic investigation of EVs isolated from BALF of IPF patients. Our main aim was to characterize the proteome of the vesicular component of BALF and to explore its individual impact on the pathogenesis of IPF. To this purpose, ultracentrifugation was chosen as the EVs isolation technique, and their purification was assessed by TEM, 2DE and LC-MS/MS. Our 2DE data and scatter plots showed considerable differences between the proteome of EVs and that of whole BALF and of its fluid component. Analysis of protein content and protein functions evidenced that EV proteins are predominantly involved in cytoskeleton remodeling, adenosine signaling, adrenergic signaling, C-peptide signaling and lipid metabolism. Our findings may suggest a wider system involvement in the disease pathogenesis and support the importance of pre-fractioning of complex samples, such as BALF, in order to let low-abundant proteins-mediated pathways emerge.

Indexed as

BiomarkersBronchoalveolar Lavage FluidProteomeProteomicsAgedChromatography, LiquidDisease SusceptibilityElectrophoresis, Gel, Two-DimensionalExtracellular VesiclesFemaleHumansIdiopathic Pulmonary FibrosisMaleMiddle AgedSignal TransductionTandem Mass SpectrometryBiomarkersProteomeBALFEVsIPFshotgun proteomics

Identifiers

PMID34071777
PMCPMC8199247
OpenAlexW3157961555

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.