Evidence map›Paper›PMID 34071570›Full record

ArticlePlants (Basel, Switzerland)2021

Genome-Wide Association Mapping of Salinity Tolerance at the Seedling Stage in a Panel of Vietnamese Landraces Reveals New Valuable QTLs for Salinity Stress Tolerance Breeding in Rice.

Thao Duc Le, Floran Gathignol, Huong Thi Vu, Khanh Le Nguyen, Linh Hien Tran, Hien Thi Thu Vu, Tu Xuan Dinh, Françoise Lazennec, Xuan Hoi Pham, Anne-Aliénor Véry and 2 more

Open access · goldAbstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Frontiers in plant science · 2023
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Thao Duc LeNational Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, LMI RICE-2, Hanoi 00000, Vietnam.
Floran GathignolUMR DIADE, Université de Montpellier, IRD, 34095 Montpellier, France.
Huong Thi VuNational Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, LMI RICE-2, Hanoi 00000, Vietnam.
Khanh Le NguyenFaculty of Agricultural Technology, University of Engineering and Technology, Hanoi 00000, Vietnam.
Linh Hien TranNational Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, LMI RICE-2, Hanoi 00000, Vietnam.
Hien Thi Thu VuDepartment of Genetics and Plant Breeding, Faculty of Agronomy, Vietnam National University of Agriculture, Hanoi 00000, Vietnam.ORCID 0000-0002-9448-4901
Tu Xuan DinhIncubation and Support Center for Technology and Science Enterprises, Hanoi 00000, Vietnam.
Françoise LazennecUMR DIADE, Université de Montpellier, IRD, 34095 Montpellier, France.
Xuan Hoi PhamNational Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, LMI RICE-2, Hanoi 00000, Vietnam.
Anne-Aliénor VéryUMR BPMP, Univ Montpellier, CNRS, INRAE, Institut Agro, 34060 Montpellier, France.
Pascal GantetUMR DIADE, Université de Montpellier, IRD, 34095 Montpellier, France.ORCID 0000-0003-1314-0187
Giang Thi HoangNational Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, LMI RICE-2, Hanoi 00000, Vietnam.
Agricultural Genetics Institute · VNUniversité de Montpellier · FRVietnam National University of Agriculture · VNCentre National de la Recherche Scientifique · FR

Funding

Ministry of Science and Technology of Vietnam NDT.56.FRA/19
6 · The paper itself

Abstract

Rice tolerance to salinity stress involves diverse and complementary mechanisms, such as the regulation of genome expression, activation of specific ion-transport systems to manage excess sodium at the cell or plant level, and anatomical changes that avoid sodium penetration into the inner tissues of the plant. These complementary mechanisms can act synergistically to improve salinity tolerance in the plant, which is then interesting in breeding programs to pyramidize complementary QTLs (quantitative trait loci), to improve salinity stress tolerance of the plant at different developmental stages and in different environments. This approach presupposes the identification of salinity tolerance QTLs associated with different mechanisms involved in salinity tolerance, which requires the greatest possible genetic diversity to be explored. To contribute to this goal, we screened an original panel of 179 Vietnamese rice landraces genotyped with 21,623 SNP markers for salinity stress tolerance under 100 mM NaCl treatment, at the seedling stage, with the aim of identifying new QTLs involved in the salinity stress tolerance via a genome-wide association study (GWAS). Nine salinity tolerance-related traits, including the salt injury score, chlorophyll and water content, and K

Indexed as

GWASQTLricesalinity toleranceVietnamese landraces

Identifiers

PMID34071570
PMCPMC8228224
OpenAlexW3165509600

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.