Evidence map›Paper›PMID 34071060›Full record

ArticleBiomolecules2021

Attacking COVID-19 Progression Using Multi-Drug Therapy for Synergetic Target Engagement.

Mathew A Coban, Juliet Morrison, Sushila Maharjan, David Hyram Hernandez Medina, Wanlu Li, Yu Shrike Zhang, William D Freeman, Evette S Radisky, Karine G Le Roch, Carla M Weisend and 2 more

Open access · goldAbstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Modeling Lewy body disease withScience advances · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
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  11. Article
  12. Review
  13. Article
  14. Stem cell therapy for COVID-19 pneumonia.Molecular biomedicine · 2022
    Review
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 1 country.

Mathew A CobanDepartment of Cancer Biology, Mayo Clinic, 4500 San Pablo Road South, Jacksonville, FL 32224, USA.ORCID 0000-0001-6396-6759
Juliet MorrisonDepartment of Microbiology and Plant Pathology, University of California, 900 University, Riverside, CA 92521, USA.ORCID 0000-0001-7387-6351
Sushila MaharjanDivision of Engineering in Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, 65 Landsdowne St, Cambridge, MA 02139, USA.ORCID 0000-0003-3957-3976
David Hyram Hernandez MedinaDivision of Engineering in Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, 65 Landsdowne St, Cambridge, MA 02139, USA.ORCID 0000-0003-3722-9629
Wanlu LiDivision of Engineering in Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, 65 Landsdowne St, Cambridge, MA 02139, USA.
Yu Shrike ZhangDivision of Engineering in Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, 65 Landsdowne St, Cambridge, MA 02139, USA.ORCID 0000-0002-0045-0808
William D FreemanDepartment of Neurology, Mayo Clinic, 4500 San Pablo South, Jacksonville, FL 32224, USA.
Evette S RadiskyDepartment of Cancer Biology, Mayo Clinic, 4500 San Pablo Road South, Jacksonville, FL 32224, USA.ORCID 0000-0003-3121-109X
Karine G Le RochDepartment of Molecular, Cell and Systems Biology, University of California, 900 University, Riverside, CA 92521, USA.
Carla M WeisendDepartment of Molecular Medicine, Mayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0002-6797-2731
Hideki EbiharaDepartment of Molecular Medicine, Mayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0002-2576-9735
Thomas R CaulfieldDepartment of Cancer Biology, Mayo Clinic, 4500 San Pablo Road South, Jacksonville, FL 32224, USA.ORCID 0000-0002-1055-3069
Brigham and Women's Hospital · USMayo Clinic in Florida · USMayo Clinic in Arizona · USUniversity of California, Riverside · USMayo Clinic · US

Funding

Chromatin structure and control of gene expression in the human malaria parasiteR01AI136511 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$3.4M
RAPs-mediated post-transcriptional control in Apicomplexan parasitesR01AI142743 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2018 to 2022
$2.8M
Evolution of the 3D chromatin structure in apicomplexan parasitesR21AI142506 · NIAID · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI LE ROCH, KARINE GAELLE · 2019 to 2020
$479k
NIAID NIH HHS R01 AI136511NIAID NIH HHS R01 AI142743NIAID NIH HHS R21 AI142506
6 · The paper itself

Abstract

COVID-19 is a devastating respiratory and inflammatory illness caused by a new coronavirus that is rapidly spreading throughout the human population. Over the past 12 months, severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus responsible for COVID-19, has already infected over 160 million (>20% located in United States) and killed more than 3.3 million people around the world (>20% deaths in USA). As we face one of the most challenging times in our recent history, there is an urgent need to identify drug candidates that can attack SARS-CoV-2 on multiple fronts. We have therefore initiated a computational dynamics drug pipeline using molecular modeling, structure simulation, docking and machine learning models to predict the inhibitory activity of several million compounds against two essential SARS-CoV-2 viral proteins and their host protein interactors-S/Ace2, Tmprss2, Cathepsins L and K, and Mpro-to prevent binding, membrane fusion and replication of the virus, respectively. All together, we generated an ensemble of structural conformations that increase high-quality docking outcomes to screen over >6 million compounds including all FDA-approved drugs, drugs under clinical trial (>3000) and an additional >30 million selected chemotypes from fragment libraries. Our results yielded an initial set of 350 high-value compounds from both new and FDA-approved compounds that can now be tested experimentally in appropriate biological model systems. We anticipate that our results will initiate screening campaigns and accelerate the discovery of COVID-19 treatments.

Indexed as

COVID-19 Drug TreatmentAngiotensin-Converting Enzyme 2Antiviral AgentsBinding SitesCOVID-19Drug DiscoveryDrug RepositioningHumansMachine LearningMolecular Docking SimulationSARS-CoV-2Serine EndopeptidasesViral Envelope ProteinsVirus ReplicationACE2 protein, humanAngiotensin-Converting Enzyme 2Antiviral AgentsSerine EndopeptidasesTMPRSS2 protein, humanViral Envelope ProteinsbioprintingCOVIDdrug discoverymulti-drug therapy

Identifiers

PMID34071060
PMCPMC8224684
OpenAlexW3038446713

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.