Evidence map›Paper›PMID 34070668›Full record

ArticleDiagnostics (Basel, Switzerland)2021

Diagnostic Yield and Cost-Effectiveness of "Dynamic" Exome Analysis in Epilepsy with Neurodevelopmental Disorders: A Tertiary-Center Experience in Northern Italy.

Costanza Varesio, Simone Gana, Alessia Asaro, Elena Ballante, Raffaella Fiamma Cabini, Elena Tartara, Michela Bagnaschi, Ludovica Pasca, Marialuisa Valente, Simona Orcesi and 5 more

Open access · goldAbstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Costanza VaresioDepartment of Child Neurology and Psychiatry, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0001-5645-021X
Simone GanaMedical Genetics Unit, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Alessia AsaroMedical Genetics Unit, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Elena BallanteBioData Science Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0003-3217-8930
Raffaella Fiamma CabiniDepartment of Mathematics, University of Pavia, 27100 Pavia, Italy.
Elena TartaraEpilepsy Center, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Michela BagnaschiDepartment of Brain and Behavioral Sciences, University of Pavia, 27100 Pavia, Italy.
Ludovica PascaDepartment of Child Neurology and Psychiatry, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Marialuisa ValenteMedical Genetics Unit, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0002-3080-905X
Simona OrcesiDepartment of Child Neurology and Psychiatry, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0001-8947-9342
Cristina CeredaMolecular Genetics and Cytogenetics Section, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0001-9571-0862
Pierangelo VeggiottiPediatric Neurology Unit, Vittore Buzzi Hospital, 20100 Milano, Italy.ORCID 0000-0003-2851-3441
Renato BorgattiDepartment of Child Neurology and Psychiatry, IRCCS Mondino Foundation, 27100 Pavia, Italy.
Enza Maria ValenteMedical Genetics Unit, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0002-0600-6820
Valentina De GiorgisDepartment of Child Neurology and Psychiatry, IRCCS Mondino Foundation, 27100 Pavia, Italy.ORCID 0000-0002-5828-7070
University of Pavia · ITItalian institute for Genomic Medicine · ITOspedale SS. Annunziata · ITUniversity of Milan · IT

Funding

Ministero della Salute RC 2020-2022
6 · The paper itself

Abstract

backgroundThe advent of next-generation sequencing (NGS) techniques in clinical practice led to a significant advance in gene discovery. We aimed to describe diagnostic yields of a "dynamic" exome-based approach in a cohort of patients with epilepsy associated with neurodevelopmental disorders.

methodsWe conducted a retrospective, observational study on 72 probands. All patients underwent a first diagnostic level of a 135 gene panel, a second of 297 genes for inconclusive cases, and finally, a whole-exome sequencing for negative cases. Diagnostic yields at each step and cost-effectiveness were the objects of statistical analysis.

resultsOverall diagnostic yield in our cohort was 37.5%: 29% of diagnoses derived from the first step analysis, 5.5% from the second step, and 3% from the third. A significant difference emerged between the three diagnostic steps (

conclusionsOur findings suggested that "dynamic" NGS techniques applied to well-phenotyped individuals can save both time and resources. In patients with unexplained epilepsy comorbid with NDDs, our approach might maximize the number of diagnoses achieved.

Indexed as

developmental epileptic encephalopathiesdynamic approachepilepsyexome sequencingneurodevelopmental disordersnext-generation sequencing techniquesvirtual genetic panels

Identifiers

PMID34070668
PMCPMC8228291
OpenAlexW3165644838

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.