Evidence map›Paper›PMID 34070420›Full record

ArticleInternational journal of molecular sciences2021

Ubiquitin-Specific Protease 3 Deubiquitinates and Stabilizes Oct4 Protein in Human Embryonic Stem Cells.

Byung-Ho Rhie, Ainsley Mike Antao, Janardhan Keshav Karapurkar, Min-Seong Kim, Won-Jun Jo, Suresh Ramakrishna, Kye-Seong Kim

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Byung-Ho RhieGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Ainsley Mike AntaoGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Janardhan Keshav KarapurkarGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Min-Seong KimGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Won-Jun JoGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Suresh RamakrishnaGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Kye-Seong KimGraduate School of Biomedical Science and Engineering, Hanyang University, Seoul 04763, Korea.
Hanyang University · KR

Funding

National Research Foundation of Korea 2017M3A9B3061830National Research Foundation of Korea 2017R1A5A2015395
6 · The paper itself

Abstract

Oct4 is an important mammalian POU family transcription factor expressed by early human embryonic stem cells (hESCs). The precise level of Oct4 governs the pluripotency and fate determination of hESCs. Several post-translational modifications (PTMs) of Oct4 including phosphorylation, ubiquitination, and SUMOylation have been reported to regulate its critical functions in hESCs. Ubiquitination and deubiquitination of Oct4 should be well balanced to maintain the pluripotency of hESCs. The protein turnover of Oct4 is regulated by several E3 ligases through ubiquitin-mediated degradation. However, reversal of ubiquitination by deubiquitinating enzymes (DUBs) has not been reported for Oct4. In this study, we generated a ubiquitin-specific protease 3 (USP3) gene knockout using the CRISPR/Cas9 system and demonstrated that USP3 acts as a protein stabilizer of Oct4 by deubiquitinating Oct4. USP3 interacts with endogenous Oct4 and co-localizes in the nucleus of hESCs. The depletion of USP3 leads to a decrease in Oct4 protein level and loss of pluripotent morphology in hESCs. Thus, our results show that USP3 plays an important role in controlling optimum protein level of Oct4 to retain pluripotency of hESCs.

Indexed as

Carcinoma, EmbryonalCell DifferentiationCell Line, TumorCRISPR-Cas SystemsDeubiquitinating EnzymesEmbryonic Stem CellsGene Knockout TechniquesHumansOctamer Transcription Factor-3Protein BindingProtein Processing, Post-TranslationalProtein StabilitySingle-Cell AnalysisUbiquitinationUbiquitin-Specific ProteasesDeubiquitinating EnzymesOctamer Transcription Factor-3POU5F1 protein, humanUbiquitin-Specific ProteasesUSP3 protein, human26S proteasomeCRISPR/Cas9embryonic carcinoma cellsgene knockoutpost-translational modifications

Identifiers

PMID34070420
PMCPMC8197518
OpenAlexW3164105019

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.