Evidence map›Paper›PMID 34068780›Full record

ArticleBiomolecules2021

Computational Study on Selective PDE9 Inhibitors on PDE9-Mg/Mg, PDE9-Zn/Mg, and PDE9-Zn/Zn Systems.

Dakshinamurthy Sivakumar, Sathishkumar Mudedla, Seonghun Jang, Hyunjun Kim, Hyunjin Park, Yonwon Choi, Joongyo Oh, Sangwook Wu

Abstract read
In one paragraph

Article in Biomolecules, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Mechanism of interaction between autophagy and apoptosis in cancer.Apoptosis : an international journal on programmed cell death · 2021
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Dakshinamurthy SivakumarR&D Center, Pharmcadd, 221, 17 APEC-ro, Haeundae-gu, Busan 48060, Korea.ORCID 0000-0003-2130-1155
Sathishkumar MudedlaR&D Center, Pharmcadd, 221, 17 APEC-ro, Haeundae-gu, Busan 48060, Korea.
Seonghun JangR&D Center, Pharmcadd, 221, 17 APEC-ro, Haeundae-gu, Busan 48060, Korea.
Hyunjun KimR&D Center, Huons co. Ltd., Ansan-si 15588, Korea.
Hyunjin ParkR&D Center, Huons co. Ltd., Ansan-si 15588, Korea.
Yonwon ChoiR&D Center, Huons co. Ltd., Ansan-si 15588, Korea.
Joongyo OhR&D Center, Huons co. Ltd., Ansan-si 15588, Korea.
Sangwook WuR&D Center, Pharmcadd, 221, 17 APEC-ro, Haeundae-gu, Busan 48060, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PDE9 inhibitors have been studied to validate their potential to treat diabetes, neurodegenerative disorders, cardiovascular diseases, and erectile dysfunction. In this report, we have selected highly potent previously reported selective PDE9 inhibitors BAY73-6691R, BAY73-6691S, 28r, 28s, 3r, 3s, PF-0447943, PF-4181366, and 4r to elucidate the differences in their interaction patterns in the presence of different metal systems such as Zn/Mg, Mg/Mg, and Zn/Zn. The initial complexes were generated by molecular docking followed by molecular dynamics simulation for 100 ns in triplicate for each system to understand the interactions' stability. The results were carefully analyzed, focusing on the ligands' non-bonded interactions with PDE9 in different metal systems.

Indexed as

3',5'-Cyclic-AMP PhosphodiesterasesComputational ChemistryCrystallography, X-RayHumansLigandsMagnesiumMolecular Docking SimulationPhosphodiesterase InhibitorsStructure-Activity RelationshipZinc3',5'-Cyclic-AMP PhosphodiesterasesLigandsMagnesiumPDE9A protein, humanPhosphodiesterase InhibitorsZincBAY73-6691metal complexesmolecular dynamicsPDE9selective inhibitors

Identifiers

PMID34068780
PMCPMC8151263

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.