Evidence map›Paper›PMID 34068162›Full record

ArticleAnimals : an open access journal from MDPI2021

Genome-Wide Association Study Provides Insights into Important Genes for Reproductive Traits in Nelore Cattle.

Ana Paula Sbardella, Rafael Nakamura Watanabe, Rebeka Magalhães da Costa, Priscila Arrigucci Bernardes, Larissa Graciano Braga, Fernando Sebastián Baldi Rey, Raysildo Barbosa Lôbo, Danísio Prado Munari

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 19 citations in OpenAlex.

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  16. Review
  17. Single-step genome-wide association studies and post-GWAS analyses for the number of oocytes and embryos in Gir cattle.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Ana Paula SbardellaDepartamento de Engenharia e Ciências Exatas, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.
Rafael Nakamura WatanabeDepartamento de Engenharia e Ciências Exatas, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.
Rebeka Magalhães da CostaDepartamento de Engenharia e Ciências Exatas, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.
Priscila Arrigucci BernardesDepartamento de Zootecnia e Desenvolvimento Rural, Universidade Federal de Santa Catarina, Florianópolis 88034-000, Santa Catarina, Brazil.
Larissa Graciano BragaDepartamento de Engenharia e Ciências Exatas, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.ORCID 0000-0002-8374-5168
Fernando Sebastián Baldi ReyDepartamento de Zootecnia, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.
Raysildo Barbosa LôboDepartamento de Genética, Universidade de São Paulo, Ribeirão Preto 14040-030, São Paulo, Brazil.
Danísio Prado MunariDepartamento de Engenharia e Ciências Exatas, Universidade Estadual Paulista, Jaboticabal 14884-900, São Paulo, Brazil.ORCID 0000-0001-6915-038X
Universidade de São Paulo · BRUniversidade Estadual Paulista (Unesp) · BRUniversidade Federal de Santa Catarina · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of genomic regions associated with reproductive traits as well as their biological processes allows a better understanding of the phenotypic variability of these traits. This information could be applied to animal breeding programs to accelerate genetic gain. The aim of this study was to evaluate the association between single nucleotide polymorphisms (SNP) with a scrotal circumference at 365 days of age (SC365) and at 450 days of age (SC450), gestation length (GL) as a calf trait, age at first calving (AFC), accumulated productivity (ACP), heifer early calving until 30 months (HC30), and stayability (STAY) traits, in order to identify candidate genes and biological pathways associated with reproductive traits in Nelore cattle. The data set consisted of pedigree, phenotypes, and genotypes of Nelore cattle from the "Associação Nacional de Criadores e Pesquisadores" (ANCP). The association analyses were performed using the Weighted Single-Step Genome-Wide Association method; the regions, consisting of 10 consecutive SNP, which explained more than 0.5% of additive genetic variance, were considered as a significant association. A total of 3, 6, 7, 5, 10, 25, and 12 windows were associated with SC355, SC450, GL, AFC, ACP, HC30, and STAY, respectively. The results revealed genes with important functions for reproductive traits, such as fertility and precocity. Some genes were associated with more than one trait, among them

Indexed as

beef cattlecandidate genesreproductionWssGWAS

Identifiers

PMID34068162
PMCPMC8152989
OpenAlexW3161181677

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.