Evidence map›Paper›PMID 34066823›Full record

ArticleGenes2021

Identification and Functional Annotation of Genes Related to Bone Stability in Laying Hens Using Random Forests.

Simon Jansen, Ulrich Baulain, Christin Habig, Faisal Ramzan, Jens Schauer, Armin Otto Schmitt, Armin Manfred Scholz, Ahmad Reza Sharifi, Annett Weigend, Steffen Weigend

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Deciphering Pleiotropic Signatures of Regulatory SNPs inInternational journal of molecular sciences · 2022
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Simon JansenInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.ORCID 0000-0002-9751-6999
Ulrich BaulainInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.
Christin HabigInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.
Faisal RamzanBreeding Informatics Group, Department of Animal Sciences, University of Göttingen, 37075 Göttingen, Germany.ORCID 0000-0002-6637-1854
Jens SchauerInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.
Armin Otto SchmittBreeding Informatics Group, Department of Animal Sciences, University of Göttingen, 37075 Göttingen, Germany.ORCID 0000-0002-4910-9467
Armin Manfred ScholzLivestock Center of the Faculty of Veterinary Medicine, Ludwig-Maximilians-University Munich, 85764 Oberschleissheim, Germany.ORCID 0000-0001-7075-0067
Ahmad Reza SharifiCenter for Integrated Breeding Research (CiBreed), University of Göttingen, 37075 Göttingen, Germany.
Annett WeigendInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.
Steffen WeigendInstitute of Farm Animal Genetics, Friedrich-Loeffler-Institut, 31535 Neustadt, Germany.ORCID 0000-0002-5670-2808
Friedrich-Loeffler-Institut · DEUniversity of Göttingen · DELudwig-Maximilians-Universität München · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Skeletal disorders, including fractures and osteoporosis, in laying hens cause major welfare and economic problems. Although genetics have been shown to play a key role in bone integrity, little is yet known about the underlying genetic architecture of the traits. This study aimed to identify genes associated with bone breaking strength and bone mineral density of the tibiotarsus and the humerus in laying hens. Potentially informative single nucleotide polymorphisms (SNP) were identified using Random Forests classification. We then searched for genes known to be related to bone stability in close proximity to the SNPs and identified 16 potential candidates. Some of them had human orthologues. Based on our findings, we can support the assumption that multiple genes determine bone strength, with each of them having a rather small effect, as illustrated by our SNP effect estimates. Furthermore, the enrichment analysis showed that some of these candidates are involved in metabolic pathways critical for bone integrity. In conclusion, the identified candidates represent genes that may play a role in the bone integrity of chickens. Although further studies are needed to determine causality, the genes reported here are promising in terms of alleviating bone disorders in laying hens.

Indexed as

Polymorphism, Single NucleotideAnimalsAvian ProteinsBone DensityChickensDecision TreesFemaleGenome-Wide Association StudyAvian Proteinsbone breaking strengthbone mineral densitygene set enrichment analysisosteoporosisRandom Forestssingle nucleotide polymorphismskeletal integrity

Identifiers

PMID34066823
PMCPMC8151682
OpenAlexW3159995438

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.