Evidence map›Paper›PMID 34066767›Full record

ArticleGenes2021

Intestinal Transcriptome Analysis Reveals Enrichment of Genes Associated with Immune and Lipid Mechanisms, Favoring Soybean Meal Tolerance in High-Growth Zebrafish (

Luis Valenzuela, Sebastian Pacheco, Gonzalo Rincón, Leonardo Pavez, Natalia Lam, Adrián J Hernández, Patricio Dantagnan, Felipe González, Felipe Jilberto, M Cristina Ravanal and 4 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 2 countries.

Luis ValenzuelaOmics Lab, Villavicencio 378, Oficina 32, Santiago 8320164, Chile.
Sebastian PachecoPrograma de Doctorado en Inmunología y Microbiología, Universidad San Sebastian, Lota 2465, Santiago 7510157, Chile.
Gonzalo RincónZoetis, VMRD Genetics R&D, 333 Portage Street, Kalamazoo, MI 49007, USA.
Leonardo PavezNúcleo de Investigaciones Aplicadas en Ciencias Veterinarias y Agronómicas, Universidad de Las Américas, Avenida Manuel Montt 948, Santiago 7500975, Chile.
Natalia LamDepartamento de Producción Animal, Facultad de Ciencias Agronómicas, Universidad de Chile, Santa Rosa 11315, Santiago 8820808, Chile.
Adrián J HernándezLaboratorio de Nutrición y Fisiología de Peces, Núcleo de Investigación en Producción Alimentaria, Departamento de Ciencias Agropecuarias y Acuícolas, Facultad de Recursos Naturales, Universidad Católica de Temuco, Temuco 4780000, Chile.ORCID 0000-0002-8209-2994
Patricio DantagnanLaboratorio de Nutrición y Fisiología de Peces, Núcleo de Investigación en Producción Alimentaria, Departamento de Ciencias Agropecuarias y Acuícolas, Facultad de Recursos Naturales, Universidad Católica de Temuco, Temuco 4780000, Chile.ORCID 0000-0001-8455-1448
Felipe GonzálezNúcleo de Investigaciones Aplicadas en Ciencias Veterinarias y Agronómicas, Universidad de Las Américas, Avenida Manuel Montt 948, Santiago 7500975, Chile.
Felipe JilbertoDepartamento de Producción Animal, Facultad de Ciencias Agronómicas, Universidad de Chile, Santa Rosa 11315, Santiago 8820808, Chile.
M Cristina RavanalInstituto de Ciencia y Tecnología de los Alimentos (ICYTAL), Facultad de Ciencias Agrarias y Alimentarias, Universidad Austral de Chile, Avda. Julio Sarrazín s/n, Isla Teja, Valdivia 5090000, Chile.
Cecilia RamosNúcleo de Investigaciones Aplicadas en Ciencias Veterinarias y Agronómicas, Universidad de Las Américas, Avenida Manuel Montt 948, Santiago 7500975, Chile.
Héctor GarciaLaboratorios Diagnofruit Ltd.a., Depto. Fitopatología Molecular, Santiago 7770273, Chile.ORCID 0000-0002-7150-7664
Cristian AranedaDepartamento de Producción Animal, Facultad de Ciencias Agronómicas, Universidad de Chile, Santa Rosa 11315, Santiago 8820808, Chile.ORCID 0000-0002-9986-5340
Pilar E UlloaNúcleo de Investigaciones Aplicadas en Ciencias Veterinarias y Agronómicas, Universidad de Las Américas, Avenida Manuel Montt 948, Santiago 7500975, Chile.
University of the Americas · CLUniversity of Chile · CLUniversidad Católica de Temuco · CLAustral University of Chile · CLSan Sebastián University · CLZoetis (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The molecular mechanisms underlying fish tolerance to soybean meal (SBM) remain unclear. Identifying these mechanisms would be beneficial, as this trait favors growth. Two fish replicates from 19 experimental families were fed fishmeal-(100FM) or SBM-based diets supplemented with saponin (50SBM + 2SPN) from juvenile to adult stages. Individuals were selected from families with a genotype-by-environment interaction higher (HG-50SBM + 2SPN, 170 ± 18 mg) or lower (LG-50SBM + 2SPN, 76 ± 10 mg) weight gain on 50SBM + 2SPN for intestinal transcriptomic analysis. A histological evaluation confirmed middle intestinal inflammation in the LG- vs. HG-50SBM + 2SPN group. Enrichment analysis of 665 differentially expressed genes (DEGs) identified pathways associated with immunity and lipid metabolism. Genes linked to intestinal immunity were downregulated in HG fish (

Indexed as

Immunity, InnateLipid MetabolismTranscriptomeAnimalsIntestinal MucosaSignal TransductionSoybean ProteinsZebrafishZebrafish ProteinsSoybean ProteinsZebrafish Proteinshigh-growth fishRNA-seqsoybean meal tolerancesustainable aquaculturetranscriptomezebrafish

Identifiers

PMID34066767
PMCPMC8151431
OpenAlexW3162801039

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.