Evidence map›Paper›PMID 34065033›Full record

ArticleViruses2021

Novel Clade 2.3.4.4b Highly Pathogenic Avian Influenza A H5N8 and H5N5 Viruses in Denmark, 2020.

Yuan Liang, Jakob N Nissen, Jesper S Krog, Solvej Ø Breum, Ramona Trebbien, Lars E Larsen, Charlotte K Hjulsager

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 41 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Yuan LiangDepartment of Veterinary and Animal Sciences, University of Copenhagen, 1870 Frederiksberg, Denmark.
Jakob N NissenVirus and Microbiological Special Diagnostics, Statens Serum Institut, 2300 Copenhagen S, Denmark.
Jesper S KrogVirus and Microbiological Special Diagnostics, Statens Serum Institut, 2300 Copenhagen S, Denmark.
Solvej Ø BreumVirus and Microbiological Special Diagnostics, Statens Serum Institut, 2300 Copenhagen S, Denmark.
Ramona TrebbienVirus and Microbiological Special Diagnostics, Statens Serum Institut, 2300 Copenhagen S, Denmark.
Lars E LarsenDepartment of Veterinary and Animal Sciences, University of Copenhagen, 1870 Frederiksberg, Denmark.ORCID 0000-0003-0730-5555
Charlotte K HjulsagerVirus and Microbiological Special Diagnostics, Statens Serum Institut, 2300 Copenhagen S, Denmark.ORCID 0000-0001-7557-8876
Statens Serum Institut · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Since late 2020, outbreaks of H5 highly pathogenic avian influenza (HPAI) viruses belonging to clade 2.3.4.4b have emerged in Europe. To investigate the evolutionary history of these viruses, we performed genetic characterization on the first HPAI viruses found in Denmark during the autumn of 2020. H5N8 viruses from 14 wild birds and poultry, as well as one H5N5 virus from a wild bird, were characterized by whole genome sequencing and phylogenetic analysis. The Danish H5N8 viruses were found to be genetically similar to each other and to contemporary European clade 2.3.4.4b H5N8 viruses, while the Danish H5N5 virus was shown to be a unique genotype from the H5N5 viruses that circulated at the same time in Russia, Germany, and Belgium. Genetic analyses of one of the H5N8 viruses revealed the presence of a substitution (PB2-M64T) that is highly conserved in human seasonal influenza A viruses. Our analyses showed that the late 2020 clade 2.3.4.4b HPAI H5N8 viruses were most likely new incursions introduced by migrating birds to overwintering sites in Europe, rather than the result of continued circulation of H5N8 viruses from previous introductions to Europe in 2016/2017 and early 2020.

Indexed as

GenotypeAnimalsDenmarkDisease OutbreaksGenes, ViralGenome, ViralGeography, MedicalHumansInfluenza A virusInfluenza A Virus, H5N8 SubtypeInfluenza, HumanInfluenza in BirdsPhylogenyPopulation SurveillancePoultrydisease outbreaksEuropeH5N5 subtypeH5N8 subtypeinfluenza A virusinfluenza in birdsphylogenypoultrywild

Identifiers

PMID34065033
PMCPMC8151437
OpenAlexW3162850891

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.