Evidence map›Paper›PMID 34064770›Full record

ArticleGenes2021

Genome-Wide Association Study Identified Novel Candidate Loci/Genes Affecting Lodging Resistance in Rice.

Bingxin Meng, Tao Wang, Yi Luo, Deze Xu, Lanzhi Li, Ying Diao, Zhiyong Gao, Zhongli Hu, Xingfei Zheng

Open access · goldAbstract read
In one paragraph

Article in Genes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Strong culm: a crucial trait for developing next-generation climate-resilient rice lines.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  8. Article
  9. Article
  10. Identification of a Rice Leaf Width GeneInternational journal of molecular sciences · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Bingxin MengState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Tao WangState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Yi LuoState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Deze XuInstitute of Food Crops, Hubei Academy of Agricultural Sciences, Wuhan 430064, China.
Lanzhi LiHunan Engineering Technology Research Center, Hunan Agricultural University, Changsha 410128, China.
Ying DiaoState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Zhiyong GaoState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Zhongli HuState Key Laboratory of Hybrid Rice, Hubei Lotus Engineering Center, College of life sciences, Wuhan University, Wuhan 430072, China.
Xingfei ZhengInstitute of Food Crops, Hubei Academy of Agricultural Sciences, Wuhan 430064, China.
Wuhan University · CNHubei Academy of Agricultural Sciences · CNHunan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lodging reduces rice yield, but increasing lodging resistance (LR) usually limits yield potential. Stem strength and leaf type are major traits related to LR and yield, respectively. Hence, understanding the genetic basis of stem strength and leaf type is of help to reduce lodging and increase yield in LR breeding. Here, we carried out an association analysis to identify quantitative trait locus (QTLs) affecting stem strength-related traits (internode length/IL, stem wall thickness/SWT, stem outer diameter/SOD, and stem inner diameter/SID) and leaf type-associated traits (Flag leaf length/FLL, Flag leaf angle/FLA, Flag leaf width/FLW, leaf-rolling/LFR and SPAD/Soil, and plant analyzer development) using a diverse panel of 550 accessions and evaluated over two years. Genome-wide association study (GWAS) using 4,076,837 high-quality single-nucleotide polymorphisms (SNPs) identified 89 QTLs for the nine traits. Next, through "gene-based association analysis, haplotype analysis, and functional annotation", the scope was narrowed down step by step. Finally, we identified 21 candidate genes in 9 important QTLs that included four reported genes (TUT1, OsCCC1,

Indexed as

Polymorphism, Single NucleotideQuantitative Trait, HeritableOryzaPlant StemsQuantitative Trait Locigene-based association analysisGWASleaf typelodging resistancericestem

Identifiers

PMID34064770
PMCPMC8151605
OpenAlexW3163243153

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.