Evidence map›Paper›PMID 34064231›Full record

ArticleViruses2021

Metaviromes Reveal the Dynamics of

Katrine Wacenius Skov Alanin, Laura Milena Forero Junco, Jacob Bruun Jørgensen, Tue Kjærgaard Nielsen, Morten Arendt Rasmussen, Witold Kot, Lars Hestbjerg Hansen

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Katrine Wacenius Skov AlaninDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.ORCID 0000-0003-2266-8514
Laura Milena Forero JuncoDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.
Jacob Bruun JørgensenDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.
Tue Kjærgaard NielsenDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.ORCID 0000-0001-6610-8450
Morten Arendt RasmussenDepartment of Food Science, University of Copenhagen, 1958 Frederiksberg C, Denmark.
Witold KotDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.
Lars Hestbjerg HansenDepartment of Plant and Environmental Sciences, University of Copenhagen, 1871 Frederiksberg C, Denmark.
University of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isolating single phages using plaque assays is a laborious and time-consuming process. Whether single isolated phages are the most lyse-effective, the most abundant in viromes, or those with the highest ability to make plaques in solid media is not well known. With the increasing accessibility of high-throughput sequencing, metaviromics is often used to describe viruses in environmental samples. By extracting and sequencing metaviromes from organic waste with and without exposure to a host-of-interest, we show a host-related phage community's shift, as well as identify the most enriched phages. Moreover, we isolated plaque-forming single phages using the same virome-host matrix to observe how enrichments in liquid media correspond to the metaviromic data. In this study, we observed a significant shift (

Indexed as

MetagenomeMetagenomicsViral Plaque AssayViromeComputational BiologyHost SpecificityPseudomonasPseudomonas PhagesbacteriophagesIllumina sequencingmetaviromesOxford Nanopore TechnologiesPEG precipitationphage enrichmentplaque-assayPseudomonas syringae pv. tomato DC3000viromes

Identifiers

PMID34064231
PMCPMC8224292
OpenAlexW3163549995

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.