Evidence map›Paper›PMID 34063166›Full record

ArticleViruses2021

Phylogenetic Analysis of the 2020 West Nile Virus (WNV) Outbreak in Andalusia (Spain).

Carlos S Casimiro-Soriguer, Javier Perez-Florido, Jose L Fernandez-Rueda, Irene Pedrosa-Corral, Vicente Guillot-Sulay, Nicola Lorusso, Luis Javier Martinez-Gonzalez, Jose M Navarro-Marí, Joaquin Dopazo, Sara Sanbonmatsu-Gámez

Abstract read
In one paragraph

Article in Viruses, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  5. Review
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  7. Article
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  9. Article
  10. West Nile virus in the Iberian Peninsula: using equine cases to identify high-risk areas for humans.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
    Article
  11. Article
  12. West Nile Virus inViruses · 2023
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Carlos S Casimiro-SoriguerClinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, 41013 Sevilla, Spain.ORCID 0000-0003-1774-2580
Javier Perez-FloridoClinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, 41013 Sevilla, Spain.
Jose L Fernandez-RuedaClinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, 41013 Sevilla, Spain.
Irene Pedrosa-CorralLaboratorio de Referencia de Virus de Andalucía, Servicio de Microbiología, Hospital Virgen de las Nieves, 18014 Granada, Spain.ORCID 0000-0002-1565-8513
Vicente Guillot-SulayLaboratorio de Referencia de Virus de Andalucía, Servicio de Microbiología, Hospital Virgen de las Nieves, 18014 Granada, Spain.
Nicola LorussoDirección General de Salud Pública y Ordenación Farmacéutica, Consejería de Salud y Familias, Junta de Andalucía, 41020, Sevilla, Spain.
Luis Javier Martinez-GonzalezGENYO, Centre for Genomics and Oncological Research: Pfizer-University of Granada-Andalusian Regional Government, 18016 Granada, Spain.ORCID 0000-0003-2202-0662
Jose M Navarro-MaríLaboratorio de Referencia de Virus de Andalucía, Servicio de Microbiología, Hospital Virgen de las Nieves, 18014 Granada, Spain.ORCID 0000-0002-5227-5167
Joaquin DopazoClinical Bioinformatics Area, Fundación Progreso y Salud (FPS), Hospital Virgen del Rocio, 41013 Sevilla, Spain.ORCID 0000-0003-3318-120X
Sara Sanbonmatsu-GámezLaboratorio de Referencia de Virus de Andalucía, Servicio de Microbiología, Hospital Virgen de las Nieves, 18014 Granada, Spain.ORCID 0000-0003-1859-927X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During recent decades West Nile Virus (WNV) outbreaks have continuously occurred in the Mediterranean area. In August 2020 a new WNV outbreak affected 71 people with meningoencephalitis in Andalusia and six more cases were detected in Extremadura (south-west of Spain), causing a total of eight deaths. The whole genomes of four viruses were obtained and phylogenetically analyzed in the context of recent outbreaks. The Andalusian viral samples belonged to lineage 1 and were relatively similar to those of previous outbreaks which occurred in the Mediterranean region. Here we present a detailed analysis of the outbreak, including an extensive phylogenetic study. As part on this effort, we implemented a local Nextstrain server, which has become a constituent piece of regional epidemiological surveillance, wherein forthcoming genomes of environmental samples or, eventually, future outbreaks, will be included.

Indexed as

PhylogenyDisease OutbreaksHumansMutationSpainWest Nile FeverWest Nile virusepidemiologymeningoencephalitisoutbreakphylogenyWest Nile Viruswhole genome sequencing

Identifiers

PMID34063166
PMCPMC8148183

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.