Evidence map›Paper›PMID 34061826›Full record

ArticlePLoS computational biology2021

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine.

Qiang Gu, Anup Kumar, Simon Bray, Allison Creason, Alireza Khanteymoori, Vahid Jalili, Björn Grüning, Jeremy Goecks

Abstract read
In one paragraph

Article in PLoS computational biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Qiang GuDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, United States of America.
Anup KumarBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-2068-4695
Simon BrayBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-0621-6705
Allison CreasonDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, United States of America.ORCID 0000-0001-5724-1276
Alireza KhanteymooriBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0001-6811-9196
Vahid JaliliDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, United States of America.ORCID 0000-0003-4986-2157
Björn GrüningBioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany.ORCID 0000-0002-3079-6586
Jeremy GoecksDepartment of Biomedical Engineering, Oregon Health & Science University, Portland, Oregon, United States of America.ORCID 0000-0002-4583-5226

Funding

Democratization of Data Analysis in Life Sciences Through GalaxyU41HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI NEKRUTENKO, ANTON, SCHATZ, MICHAEL · 2012 to 2020
$14.4M
Democratization of Data Analysis in Life Sciences Through GalaxyU24HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI Daniel James Blankenberg, Jeremy Goecks · 2021 to 2026
$9.8M
Omic and Multidimensional Spatial Atlas of Metastatic Breast CancerU2CCA233280 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOECKS, JEREMY · 2018 to 2023
$9.7M
A Federated Galaxy for user-friendly large-scale cancer genomics researchU24CA231877 · NCI · OREGON HEALTH & SCIENCE UNIVERSITY · PI GOECKS, JEREMY, SCHATZ, MICHAEL · 2018 to 2022
$3.9M
NCI NIH HHS U24 CA231877NCI NIH HHS U2C CA233280NHGRI NIH HHS U24 HG006620NHGRI NIH HHS U41 HG006620
6 · The paper itself

Abstract

Supervised machine learning is an essential but difficult to use approach in biomedical data analysis. The Galaxy-ML toolkit (https://galaxyproject.org/community/machine-learning/) makes supervised machine learning more accessible to biomedical scientists by enabling them to perform end-to-end reproducible machine learning analyses at large scale using only a web browser. Galaxy-ML extends Galaxy (https://galaxyproject.org), a biomedical computational workbench used by tens of thousands of scientists across the world, with a suite of tools for all aspects of supervised machine learning.

Indexed as

Machine LearningComputational BiologyReproducibility of ResultsSoftware

Identifiers

PMID34061826
PMCPMC8213174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.