Evidence map›Paper›PMID 34061574›Full record

ArticlemSystems2021

MetFish: a Metabolomics Pipeline for Studying Microbial Communities in Chemically Extreme Environments.

Chengdong Xu, Sneha P Couvillion, Ryan L Sontag, Nancy G Isern, Yukari Maezato, Stephen R Lindemann, Taniya Roy Chowdhury, Rui Zhao, Beau R Morton, Rosalie K Chu and 7 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Chengdong Xu *Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Sneha P Couvillion *Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Ryan L SontagEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Nancy G IsernEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Yukari MaezatoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Stephen R LindemannEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Taniya Roy ChowdhuryEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Rui ZhaoEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Beau R MortonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Rosalie K ChuEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Ronald J MooreEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Janet K JanssonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Vanessa L BaileyEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Paula J MouserDepartment of Civil and Environmental Engineering, University of New Hampshire, Durham, New Hampshire, USA.
Margaret F RomineEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
James F FredricksonEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Thomas O MetzEarth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington, USA.
Pacific Northwest National Laboratory · USUniversity of New Hampshire · US

Funding

DOE | NNSA | Laboratory Directed Research and Development (LDRD) Microbiomes in Transition InitiativeNational Science Foundation (NSF) 1342701U.S. Department of Energy (DOE) Metabolic and Spatial Interactions in Communities Scientific Focus Area
6 · The paper itself

Abstract

Metabolites have essential roles in microbial communities, including as mediators of nutrient and energy exchange, cell-to-cell communication, and antibiosis. However, detecting and quantifying metabolites and other chemicals in samples having extremes in salt or mineral content using liquid chromatography-mass spectrometry (LC-MS)-based methods remains a significant challenge. Here, we report a facile method based on

Indexed as

exometabolomicsextreme environmentshypersalinemass spectrometrymicrobial communities

Identifiers

PMID34061574
PMCPMC8269250
OpenAlexW3164712628

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.