Evidence map›Paper›PMID 34061505›Full record

ArticleACS synthetic biology2021

Cell-Free Characterization of Coherent Feed-Forward Loop-Based Synthetic Genetic Circuits.

Pascal A Pieters, Bryan L Nathalia, Ardjan J van der Linden, Peng Yin, Jongmin Kim, Wilhelm T S Huck, Tom F A de Greef

Abstract read
In one paragraph

Article in ACS synthetic biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

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  11. Timed Pulses in DNA Strand Displacement Reactions.Journal of the American Chemical Society · 2023
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  19. Decentralizing Cell-Free RNA Sensing With the Use of Low-Cost Cell Extracts.Frontiers in bioengineering and biotechnology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Pascal A PietersLaboratory of Chemical Biology and Institute for Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands.ORCID 0000-0003-2032-0100
Bryan L NathaliaComputational Biology Group, Department of Biomedical Engineering, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands.
Ardjan J van der LindenLaboratory of Chemical Biology and Institute for Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands.
Peng YinWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts 02115, United States.ORCID 0000-0002-2769-6357
Jongmin KimDivision of Integrative Biosciences and Biotechnology, Pohang University of Science and Technology, 77 Cheongam-ro, Pohang, Gyeongbuk 37673, Republic of Korea.ORCID 0000-0002-2713-1006
Wilhelm T S HuckInstitute for Molecules and Materials, Radboud University, Heyendaalseweg 135, 6525 AJ, Nijmegen, The Netherlands.ORCID 0000-0003-4222-5411
Tom F A de GreefLaboratory of Chemical Biology and Institute for Complex Molecular Systems, Department of Biomedical Engineering, Eindhoven University of Technology, P.O. Box 513, 5600 MB Eindhoven, The Netherlands.ORCID 0000-0002-9338-284X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Regulatory pathways inside living cells employ feed-forward architectures to fulfill essential signal processing functions that aid in the interpretation of various types of inputs through noise-filtering, fold-change detection and adaptation. Although it has been demonstrated computationally that a coherent feed-forward loop (CFFL) can function as noise filter, a property essential to decoding complex temporal signals, this motif has not been extensively characterized experimentally or integrated into larger networks. Here we use post-transcriptional regulation to implement and characterize a synthetic CFFL in an

Indexed as

Computer SimulationFeedback, PhysiologicalGene Regulatory NetworksCell-Free SystemEscherichia coliEscherichia coli ProteinsGenes, BacterialMicrofluidic Analytical TechniquesModels, GeneticProtein BiosynthesisSynthetic BiologyTranscription FactorsTranscription, GeneticEscherichia coli ProteinsTranscription Factorscell-free systemscoherent feed-forward looppost-transcriptional regulationsynthetic biologytemporal decoding

Identifiers

PMID34061505
PMCPMC8218305

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.