Evidence map›Paper›PMID 34061439›Full record

ArticleOral diseases2022

Variant analyses of candidate genes in orofacial clefts in multi-ethnic populations.

Mary Li, Joy Olotu, Carmen J Buxo-Martinez, Peter A Mossey, Deepti Anand, Tamara Busch, Azeez Alade, Lord J J Gowans, Mekonen Eshete, Wasiu L Adeyemo and 39 more

Open access · bronzeAbstract read
In one paragraph

Article in Oral diseases, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors at 12 institutions in 7 countries.

Mary LiDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0000-0001-6801-1177
Joy OlotuDepartment of Anatomy, University of Health Sciences, University of Port Harcourt, Choba, Nigeria.
Carmen J Buxo-MartinezDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Peter A MosseyDepartment of Orthodontics, University of Dundee, Dundee, UK.
Deepti AnandDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.
Tamara BuschDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Azeez AladeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Lord J J GowansKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.ORCID https://orcid.org/0000-0003-0080-9101
Mekonen EsheteCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Wasiu L AdeyemoDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos, Nigeria.ORCID https://orcid.org/0000-0002-0257-7853
Thirona NaickerGenetics, Department of Pediatrics, University of KwaZulu-Natal, Durban, South Africa.
Waheed O AwotoyeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Sagar GuptaDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Chinyere AdelekeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Valeria BravoDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Siyong HuangDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Olatunbosun O AdamsonDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos, Nigeria.
Ada M TorañoManchester Family Dental, Manchester, IA, USA.
Carolina A BelloMontefiore Medical Center, Bronx, NY, USA.
Mairim SotoDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Marilyn SotoDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Ricardo LedesmaDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Myrellis MarquezDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Jose F CorderoDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Lydia M Lopez-Del ValleDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Maria I SalcedoDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Natalio DebsDental and Craniofacial Genomics Core, University of Puerto Rico School of Dental Medicine, San Juan, PR, USA.
Aline PetrinDepartment of Orthodontics, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Hannah MalloyDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Khalid ElhadiDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Olutayo JamesDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos, Nigeria.
Mobolanle O OgunleweDepartment of Oral and Maxillofacial Surgery, College of Medicine, University of Lagos, Lagos, Nigeria.
Fekir AbateCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Abiye HailuCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Ibrahim MohammedCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Paul GravemCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Milliard DeribewCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Mulualem GessesCollege of Health Sciences, School of Medicine, Addis Ababa University, Addis Ababa, Ethiopia.
Mohaned HassanDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
John PapeDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.
Solomon Obiri-YeboahKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Fareed K N ArthurKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Alexander A OtiKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Peter DonkorKomfo Anokye Teaching Hospital and Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.
Mary L MarazitaCenter for Craniofacial and Dental Genetics, Departments of Oral Biology and Human Genetics, University of Pittsburgh, Pittsburgh, PA, USA.
Salil A LachkeDepartment of Biological Sciences, University of Delaware, Newark, DE, USA.
Adebowale A AdeyemoDepartment of Orthodontics, University of Dundee, Dundee, UK.
Jeffrey C MurrayDepartment of Pediatrics, University of Iowa, Iowa City, IA, USA.
Azeez ButaliDepartment of Oral Pathology, Radiology and Medicine, College of Dentistry, University of Iowa, Iowa City, IA, USA.ORCID https://orcid.org/0000-0002-1229-5964
University of Iowa · USUniversity of Puerto Rico System · PRAddis Ababa University · ETKomfo Anokye Teaching Hospital · GHUniversity of Lagos · NGUniversity of Delaware · USUniversity of Dundee · GBMontefiore Medical Center · USUniversity Dental Hospital of Manchester · GBUniversity of KwaZulu-Natal · ZAUniversity of Pittsburgh · USUniversity of Port Harcourt · NG

Funding

Hispanics in Research Capability: SoHP & SOM Partnership (HIREC)S21MD001830 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI ELIAS BONETA, AUGUSTO R, ESTAPE, ESTELA S · 2005 to 2010
$30.0M
TECHNOLOGIES AND RESOURCES FOR CORE LABORATORIESU54MD007587 · NIMHD · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LUCIANO, CARLOS A., WOJNA, VALERIE · 2012 to 2018
$23.2M
Tracking and Evaluation CoreU54GM133807 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI MAYS, MARY HELEN · 2020 to 2024
$17.7M
Whole Genome Sequencing for Orofacial Clefts, Incidental Findings and Role of Community GatekeepersR01DE028300 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2020 to 2024
$3.9M
University of Iowa Institutional Training Program in Oral Health ResearchR90DE024296 · NIDCR · UNIVERSITY OF IOWA · PI STEVEN M. LEVY · 2013 to 2026
$1.8M
Genetic and Environmental Risks for Oral Clefts in Puerto Rican HispanicsR00DE024571 · NIDCR · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI BUXO, CARMEN J. · 2018 to 2021
$1.2M
Genetic studies of nonsyndromic clefts in populations of African Descent.R00DE022378 · NIDCR · UNIVERSITY OF IOWA · PI BUTALI, AZEEZ · 2014 to 2016
$747k
Elucidating Cleft Etiology Employing Multiplex and Twin Families (ElCEEMuTF)K43DE029427 · NIDCR · KWAME NKRUMAH UNIVERSITY/SCIENCE/TECH · PI GOWANS, LORD JEPHTHAH JOOJO · 2019 to 2023
$529k
A web-based craniofacial disease gene discovery toolR03DE024776 · NIDCR · UNIVERSITY OF DELAWARE · PI LACHKE, SALIL · 2015 to 2016
$475k
NIDCR NIH HHS K43 DE029427NIDCR NIH HHS R00 DE022378NIDCR NIH HHS R00 DE024571NIDCR NIH HHS R01 DE028300NIDCR NIH HHS R01DE028300NIDCR NIH HHS R03 DE024776NIDCR NIH HHS R90 DE024296NIGMS NIH HHS U54 GM133807NIMHD NIH HHS S21 MD001830NIMHD NIH HHS U54 MD007587
6 · The paper itself

Abstract

objectivesCleft lip with/without cleft palate and cleft palate only is congenital birth defects where the upper lip and/or palate fail to fuse properly during embryonic facial development. Affecting ~1.2/1000 live births worldwide, these orofacial clefts impose significant social and financial burdens on affected individuals and their families. Orofacial clefts have a complex etiology resulting from genetic variants combined with environmental covariates. Recent genome-wide association studies and whole-exome sequencing for orofacial clefts identified significant genetic associations and variants in several genes. Of these, we investigated the role of common/rare variants in SHH, RORA, MRPL53, ACVR1, and GDF11. MATERIALS AND

methodsWe sequenced these five genes in 1255 multi-ethnic cleft lip with/without palate and cleft palate only samples in order to find variants that may provide potential explanations for the missing heritability of orofacial clefts. Rare and novel variants were further analyzed using in silico predictive tools.

resultsNinteen total variants of interest were found, with variant types including stop-gain, missense, synonymous, intronic, and splice-site variants. Of these, 3 novel missense variants were found, one in SHH, one in RORA, and one in GDF11.

conclusionThis study provides evidence that variants in SHH, RORA, MRPL53, ACVR1, and GDF11 may contribute to risk of orofacial clefts in various populations.

Indexed as

Cleft LipCleft PalateBone Morphogenetic ProteinsGenome-Wide Association StudyGrowth Differentiation FactorsHumansBone Morphogenetic ProteinsGDF11 protein, humanGrowth Differentiation Factorscandidate genecongenital birth defectcraniofacial geneticsgenome-wide association studiesnovel variantswhole-exome sequencing

Identifiers

PMID34061439
PMCPMC9733635
OpenAlexW3164342653

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.