Evidence map›Paper›PMID 34061398›Full record

ArticleJournal of leukocyte biology2021

Novel TREM2 splicing isoform that lacks the V-set immunoglobulin domain is abundant in the human brain.

Kostantin Kiianitsa, Irina Kurtz, Neal Beeman, Mark Matsushita, Wei-Ming Chien, Wendy H Raskind, Olena Korvatska

Open access · greenAbstract read
In one paragraph

Article in Journal of leukocyte biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Review
  3. Roles of TREM2 in Alzheimer's disease.Translational neurodegeneration · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A novelFrontiers in cellular neuroscience · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Association between Cerebrospinal Fluid SolubleJournal of clinical medicine · 2023
    Article
  15. Article
  16. Profile ofInternational journal of molecular sciences · 2022
    Article
  17. Review
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Kostantin KiianitsaDepartment of Immunology, University of Washington, Seattle, Washington, USA.
Irina KurtzDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Neal BeemanDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Mark MatsushitaDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Wei-Ming ChienDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Wendy H RaskindDepartment of Medicine, Division of Medical Genetics, University of Washington, Seattle, Washington, USA.
Olena KorvatskaDepartment of Psychiatry and Behavioral Sciences, University of Washington, Seattle, Washington, USA.
University of Washington Medical Center · USUniversity of Washington · US

Funding

University of Washington Nathan Shock Center of Excellence in the Basic Biology of AgingP30AG013280 · NIA · UNIVERSITY OF WASHINGTON · PI Michael MacCoss · 1995 to 2026
$27.1M
Next Generation gene discovery in neurogeneticsR01NS069719 · NINDS · UNIVERSITY OF WASHINGTON · PI RASKIND, WENDY H · 2010 to 2019
$5.0M
CSRD VA I01 CX001702NIA NIH HHS P30 AG013280NINDS NIH HHS R01 NS069719
6 · The paper itself

Abstract

Triggering receptor expressed on myeloid cells 2 (TREM2) is an immunoglobulin-like receptor expressed by certain myeloid cells, such as macrophages, dendritic cells, osteoclasts, and microglia. In the brain, TREM2 plays an important role in the immune function of microglia, and its dysfunction is linked to various neurodegenerative conditions in humans. Ablation of TREM2 or its adaptor protein TYROBP causes polycystic lipomembranous osteodysplasia with sclerosing leukoencephalopathy (also known as Nasu-Hakola disorder) with early onset of dementia, whereas some missense variants in TREM2 are associated with an increased risk of late-onset Alzheimer's disease. The human TREM2 gene is subject to alternative splicing, and its major, full-length canonic transcript encompasses 5 exons. Herein, we report a novel alternatively spliced TREM2 isoform without exon 2 (Δe2), which constitutes a sizable fraction of TREM2 transcripts and has highly variable inter-individual expression in the human brain (average frequency 10%; range 3.7-35%). The protein encoded by Δe2 lacks a V-set immunoglobulin domain from its extracellular part but retains its transmembrane and cytoplasmic domains. We demonstrated Δe2 protein expression in TREM2-positive THP-1 cells, in which the expression of full-length transcript was precluded by CRISPR/Cas9 disruption of the exon 2 coding frame. Similar to the full-length TREM2, Δe2 is sorted to the plasma membrane and is subject to receptor shedding. In "add-back" experiments, Δe2 TREM2 had diminished capacity to restore phagocytosis of amyloid beta peptide and promote IFN-I response as compared to full-length TREM2. Our findings suggest that changes in the balance of two mutually exclusive TREM2 isoforms may modify the dosage of full-length transcript potentially weakening some TREM2 receptor functions in the human brain.

Indexed as

Alternative SplicingBrainHumansImmunoglobulin DomainsMembrane GlycoproteinsMicrogliaPhagocytosisProtein IsoformsReceptors, ImmunologicMembrane GlycoproteinsProtein IsoformsReceptors, ImmunologicTREM2 protein, humanAlternative RNA splicingCD33Interferon type I responsereceptor sheddingTREM2

Identifiers

PMID34061398
PMCPMC10433532
OpenAlexW3164041136

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.