Evidence map›Paper›PMID 34061161›Full record

ArticleThe Journal of general physiology2021

Mutation of a conserved glutamine residue does not abolish desensitization of acid-sensing ion channel 1.

Matthew L Rook, Megan Miaro, Tyler Couch, Dana L Kneisley, Maria Musgaard, David M MacLean

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of general physiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

  1. Mechanism of acid-sensing ion channel modulation by Hi1a.The Journal of general physiology · 2024
    Article
  2. Article
  3. Article
  4. Proline substitutions in the ASIC1 β11-12 linker slow desensitization.bioRxiv : the preprint server for biology · 2024
    Article
  5. Article
  6. Photomodulation of the ASIC1a acidic pocket destabilizes the open state.Protein science : a publication of the Protein Society · 2023
    Article
  7. Patient-specific induced pluripotent stem cell properties implicate CaPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  8. Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Matthew L RookGraduate Program in Cellular and Molecular Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY.ORCID 0000-0002-5332-7678
Megan MiaroDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario, Canada.ORCID 0000-0003-1715-3639
Tyler CouchGraduate Program in Cellular and Molecular Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY.
Dana L KneisleyDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY.ORCID 0000-0003-4203-6872
Maria MusgaardDepartment of Chemistry and Biomolecular Sciences, University of Ottawa, Ottawa, Ontario, Canada.ORCID 0000-0001-6096-9014
David M MacLeanDepartment of Pharmacology and Physiology, University of Rochester Medical Center, Rochester, NY.ORCID 0000-0001-8294-6075
University of Rochester Medical Center · USUniversity of Ottawa · CA

Funding

Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Acid-Sensing Ion Channel gating: Conformations and ConsequencesR35GM137951 · NIGMS · UNIVERSITY OF ROCHESTER · PI David Malcolm MacLean · 2020 to 2026
$2.8M
3D structure and function of Acid Sensing Ion channelsR00NS094761 · NINDS · UNIVERSITY OF ROCHESTER · PI MACLEAN, DAVID MALCOM · 2017 to 2019
$747k
NIGMS NIH HHS R35 GM137951NIGMS NIH HHS T32 GM068411NINDS NIH HHS R00 NS094761
6 · The paper itself

Abstract

Desensitization is a common feature of ligand-gated ion channels, although the molecular cause varies widely between channel types. Mutations that greatly reduce or nearly abolish desensitization have been described for many ligand-gated ion channels, including glutamate, GABA, glycine, and nicotinic receptors, but not for acid-sensing ion channels (ASICs) until recently. Mutating Gln276 to a glycine (Q276G) in human ASIC1a was reported to mostly abolish desensitization at both the macroscopic and the single channel levels, potentially providing a valuable tool for subsequent studies. However, we find that in both human and chicken ASIC1, the effect of Q276G is modest. In chicken ASIC1, the equivalent Q277G slightly reduces desensitization when using pH 6.5 as a stimulus but desensitizes, essentially like wild-type, when using more acidic pH values. In addition, steady-state desensitization is intact, albeit right-shifted, and recovery from desensitization is accelerated. Molecular dynamics simulations indicate that the Gln277 side chain participates in a hydrogen bond network that might stabilize the desensitized conformation. Consistent with this, destabilizing this network with the Q277N or Q277L mutations largely mimics the Q277G phenotype. In human ASIC1a, the Q276G mutation also reduces desensitization, but not to the extent reported previously. Interestingly, the kinetic consequences of Q276G depend on the human variant used. In the common G212 variant, Q276G slows desensitization, while in the rare D212 variant desensitization accelerates. Our data reveal that while the Q/G mutation does not abolish or substantially impair desensitization as previously reported, it does point to unexpected differences between chicken and human ASICs and the need for careful scrutiny before using this mutation in future studies.

Indexed as

Acid Sensing Ion ChannelsGlutamineAnimalsChickensGlycineHumansHydrogen-Ion ConcentrationMutationAcid Sensing Ion ChannelsGlutamineGlycine

Identifiers

PMID34061161
PMCPMC8167889
OpenAlexW3165814839

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.