Evidence map›Paper›PMID 34061047›Full record

ArticleJCI insight2021

Single-cell immunophenotyping of the skin lesion erythema migrans identifies IgM memory B cells.

Ruoyi Jiang, Hailong Meng, Khadir Raddassi, Ira Fleming, Kenneth B Hoehn, Kenneth R Dardick, Alexia A Belperron, Ruth R Montgomery, Alex K Shalek, David A Hafler and 2 more

Abstract read
In one paragraph

Article in JCI insight, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Review
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  15. Insights From Omics in Lyme Disease.The Journal of infectious diseases · 2024
    Review
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ruoyi JiangDepartment of Immunobiology.
Hailong MengDepartment of Pathology, and.
Khadir RaddassiDepartment of Neurology, Yale School of Medicine, New Haven, Connecticut, USA.
Ira FlemingBroad Institute of MIT and Harvard University, Cambridge, Massachusetts, USA.
Kenneth B HoehnDepartment of Pathology, and.
Kenneth R DardickMansfield Family Practice, Storrs, Connecticut, USA.
Alexia A BelperronDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Ruth R MontgomeryDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Alex K ShalekBroad Institute of MIT and Harvard University, Cambridge, Massachusetts, USA.
David A HaflerDepartment of Immunobiology.
Steven H KleinsteinDepartment of Immunobiology.
Linda K BockenstedtDepartment of Internal Medicine, Yale School of Medicine, New Haven, Connecticut, USA.

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI Albert C Shaw · 2010 to 2026
$50.4M
COMPUTATIONAL TOOLS FOR THE ANALYSIS OF HIGH-THROUGHPUT IMMUNOGLOBULIN SEQUENCING EXPERIMENTSR01AI104739 · NIAID · YALE UNIVERSITY · PI KLEINSTEIN, STEVEN H. · 2014 to 2022
$3.6M
An integrated multiplexed genomic assay for low input clinical samples1U24AI118672 · NIAID · BROAD INSTITUTE, INC. · PI SHALEK, ALEX K · 2015 to 2019
$2.0M
INDEPENDENT SCIENTIST AWARDK02AI001867 · NIAID · UNIVERSITY OF NORTH CAROLINA CHAPEL HILL · PI ADIMORA, ADAORA A · 2001 to 2005
$482k
NCATS NIH HHS UL1 TR001863NIAID NIH HHS K02 AI001867NIAID NIH HHS R01 AI104739NIAID NIH HHS U19 AI089992NIAID NIH HHS U24 AI118672
6 · The paper itself

Abstract

The skin lesion erythema migrans (EM) is an initial sign of the Ixodes tick-transmitted Borreliella spirochetal infection known as Lyme disease. T cells and innate immune cells have previously been shown to predominate the EM lesion and promote the reaction. Despite the established importance of B cells and antibodies in preventing infection, the role of B cells in the skin immune response to Borreliella is unknown. Here, we used single-cell RNA-Seq in conjunction with B cell receptor (BCR) sequencing to immunophenotype EM lesions and their associated B cells and BCR repertoires. We found that B cells were more abundant in EM in comparison with autologous uninvolved skin; many were clonally expanded and had circulating relatives. EM-associated B cells upregulated the expression of MHC class II genes and exhibited preferential IgM isotype usage. A subset also exhibited low levels of somatic hypermutation despite a gene expression profile consistent with memory B cells. Our study demonstrates that single-cell gene expression with paired BCR sequencing can be used to interrogate the sparse B cell populations in human skin and reveals that B cells in the skin infection site in early Lyme disease expressed a phenotype consistent with local antigen presentation and antibody production.

Indexed as

B-LymphocytesErythema Chronicum MigransAdultAgedFemaleHistocompatibility Antigens Class IIHumansImmunoglobulin MImmunophenotypingLyme DiseaseMaleMiddle AgedRNA-SeqSingle-Cell AnalysisSkinTranscriptomeHistocompatibility Antigens Class IIImmunoglobulin MAdaptive immunityBacterial infectionsImmunologyInfectious disease

Identifiers

PMID34061047
PMCPMC8262471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.