Evidence map›Paper›PMID 34060634›Full record

ArticleNucleic acids research2021

DrugComb update: a more comprehensive drug sensitivity data repository and analysis portal.

Shuyu Zheng, Jehad Aldahdooh, Tolou Shadbahr, Yinyin Wang, Dalal Aldahdooh, Jie Bao, Wenyu Wang, Jing Tang

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 128 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Shuyu ZhengResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Jehad AldahdoohResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Tolou ShadbahrResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Yinyin WangResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Dalal AldahdoohResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Jie BaoResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Wenyu WangResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.
Jing TangResearch Program in Systems Oncology, Faculty of Medicine, University of Helsinki, Helsinki FI-00290, Finland.ORCID 0000-0001-7480-7710
University of Helsinki · FI

Funding

Academy of Finland 317680European Commission H2020 824087European Research Council 716063K. Albin Johanssons StiftelseSigrid Jusélius FoundationUniversity of Helsinki
6 · The paper itself

Abstract

Combinatorial therapies that target multiple pathways have shown great promises for treating complex diseases. DrugComb (https://drugcomb.org/) is a web-based portal for the deposition and analysis of drug combination screening datasets. Since its first release, DrugComb has received continuous updates on the coverage of data resources, as well as on the functionality of the web server to improve the analysis, visualization and interpretation of drug combination screens. Here, we report significant updates of DrugComb, including: (i) manual curation and harmonization of more comprehensive drug combination and monotherapy screening data, not only for cancers but also for other diseases such as malaria and COVID-19; (ii) enhanced algorithms for assessing the sensitivity and synergy of drug combinations; (iii) network modelling tools to visualize the mechanisms of action of drugs or drug combinations for a given cancer sample and (iv) state-of-the-art machine learning models to predict drug combination sensitivity and synergy. These improvements have been provided with more user-friendly graphical interface and faster database infrastructure, which make DrugComb the most comprehensive web-based resources for the study of drug sensitivities for multiple diseases.

Indexed as

AlgorithmsDatabases, FactualDrug Evaluation, PreclinicalDrug Therapy, CombinationInternetCOVID-19 Drug TreatmentDatasets as TopicData VisualizationDrug SynergismHemorrhagic Fever, EbolaHumansMachine LearningMalariaNeoplasms

Identifiers

PMID34060634
PMCPMC8218202
OpenAlexW3165195325

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.