Evidence map›Paper›PMID 34060624›Full record

ArticleJournal of cell science2021

An optogenetic method for interrogating YAP1 and TAZ nuclear-cytoplasmic shuttling.

Anna M Dowbaj, Robert P Jenkins, Daniel Williamson, John M Heddleston, Alessandro Ciccarelli, Todd Fallesen, Klaus M Hahn, Reuben D O'Dea, John R King, Marco Montagner and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of cell science, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Optogenetic control of YAP can enhance the rate of wound healing.Cellular & molecular biology letters · 2023
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Anna M DowbajTumour Cell Biology Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0002-6278-8011
Robert P JenkinsTumour Cell Biology Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.
Daniel WilliamsonSchool of Mathematical Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.
John M HeddlestonAdvanced Imaging Center, Janelia Research Campus, HHMI, Ashburn, VA 20147, USA.
Alessandro CiccarelliAdvanced Light Microscopy, The Francis Crick Institute, 1 Midland Road, NW1 1AT, London, UK.
Todd FallesenAdvanced Light Microscopy, The Francis Crick Institute, 1 Midland Road, NW1 1AT, London, UK.
Klaus M HahnDepartment of Pharmacology, University of North Carolina, Chapel Hill, NC 27599-7365, USA.ORCID 0000-0002-1970-7562
Reuben D O'DeaSchool of Mathematical Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.
John R KingSchool of Mathematical Sciences, University of Nottingham, Nottingham, NG7 2RD, UK.
Marco MontagnerTumour Cell Biology Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0003-3080-2138
Erik SahaiTumour Cell Biology Laboratory, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT, UK.ORCID 0000-0002-3932-5086
The Francis Crick Institute · GBUniversity of Nottingham · GBJanelia Research Campus · USUniversity of North Carolina at Chapel Hill · USUniversity of Padua · IT

Funding

Dissecting signaling in vivo via precise control and visualization of protein activityR35GM122596 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Klaus M. Hahn · 2017 to 2026
$7.4M
Cancer Research UK FC010144Howard Hughes Medical InstituteMedical Research Council FC010144NIGMS NIH HHS R35 GM122596Wellcome Trust FC010144
6 · The paper itself

Abstract

The shuttling of transcription factors and transcriptional regulators into and out of the nucleus is central to the regulation of many biological processes. Here we describe a new method for studying the rates of nuclear entry and exit of transcriptional regulators. A photo-responsive LOV (light-oxygen-voltage) domain from Avena sativa is used to sequester fluorescently labelled transcriptional regulators YAP1 and TAZ (also known as WWTR1) on the surface of mitochondria and to reversibly release them upon blue light illumination. After dissociation, fluorescent signals from the mitochondria, cytoplasm and nucleus are extracted by a bespoke app and used to generate rates of nuclear entry and exit. Using this method, we demonstrate that phosphorylation of YAP1 on canonical sites enhances its rate of nuclear export. Moreover, we provide evidence that, despite high intercellular variability, YAP1 import and export rates correlate within the same cell. By simultaneously releasing YAP1 and TAZ from sequestration, we show that their rates of entry and exit are correlated. Furthermore, combining the optogenetic release of YAP1 with lattice light-sheet microscopy reveals high heterogeneity of YAP1 dynamics within different cytoplasmic regions, demonstrating the utility and versatility of our tool to study protein dynamics. This article has an associated First Person interview with Anna M. Dowbaj, joint first author of the paper.

Indexed as

Cell NucleusOptogeneticsActive Transport, Cell NucleusAdaptor Proteins, Signal TransducingCytoplasmHumansIntracellular Signaling Peptides and ProteinsTranscriptional Coactivator with PDZ-Binding Motif ProteinsTranscription FactorsYAP-Signaling ProteinsAdaptor Proteins, Signal TransducingIntracellular Signaling Peptides and ProteinsTranscriptional Coactivator with PDZ-Binding Motif ProteinsTranscription FactorsWWTR1 protein, humanYAP1 protein, humanYAP-Signaling ProteinsNuclear–cytoplasmic shuttlingOptogeneticsTAZYAP1

Identifiers

PMID34060624
PMCPMC8313864
OpenAlexW3165582308

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.