Evidence map›Paper›PMID 34060034›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Analysis of Mitochondrial Retrograde Signaling in Yeast Model Systems.

Nicoletta Guaragnella, Maša Ždralević, Zdena Palková, Sergio Giannattasio

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.6field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Inactivation ofInternational journal of molecular sciences · 2023
    Article
  3. Microorganisms · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 4 institutions in 3 countries.

Nicoletta GuaragnellaInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies, CNR, Bari, Italy.
Maša ŽdralevićFaculty of Medicine, University of Montenegro, Podgorica, Montenegro.
Zdena PalkováFaculty of Science, Charles University, BIOCEV, Prague, Czech Republic.
Sergio GiannattasioInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies, CNR, Bari, Italy. s.giannattasio@ibiom.cnr.it.
Charles University · CZInstitute of Biomembranes, Bioenergetics and Molecular Biotechnologies · ITUniversity of Bari Aldo Moro · ITUniversity of Montenegro · ME

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mitochondrial retrograde signaling is a mitochondria-to-nucleus communication pathway, conserved from yeast to humans, by which dysfunctional mitochondria relay signals that lead to cell stress adaptation in physiopathological conditions via changes in nuclear gene expression. The most comprehensive picture of components and regulation of retrograde signaling has been obtained in Saccharomyces cerevisiae, where retrograde-target gene expression is regulated by RTG genes. In this chapter, we describe methods to measure mitochondrial retrograde pathway activation at the level of mRNA and protein products in yeast model systems, including cell suspensions and microcolonies. In particular, we will focus on three major procedures: mRNA levels of RTG-target genes, such as those encoding for peroxisomal citrate synthase (CIT2), aconitase, and NAD

Indexed as

Aconitate HydrataseBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCell NucleusCitrate (si)-SynthaseIntracellular Signaling Peptides and ProteinsIsocitrate DehydrogenaseMitochondriaPhosphorylationSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionAconitate HydrataseBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCitrate (si)-SynthaseIntracellular Signaling Peptides and ProteinsIsocitrate DehydrogenaseRTG1 protein, S cerevisiaeRTG2 protein, S cerevisiaeRTG3 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsACO1CIT2IDH1Mitochondrial retrograde pathwayRTG genesYeast

Identifiers

PMID34060034
OpenAlexW3165645061

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.