Evidence map›Paper›PMID 34056027›Full record

ArticleIranian journal of biotechnology2020

Distribution and Classification of Dehydrins in Selected Plant Species Using Bioinformatics Approach.

Nadir Zaman Khan, Shahzadi Lal, Waqar Ali, Muhammad Aasim, Saqib Mumtaz, Atif Kamil, Noor Shad Bibi

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Article in Iranian journal of biotechnology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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3citing papers in PubMed
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3 · Its place in the literature

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3 citing papers in PubMed.

  1. Article
  2. Heterologous expression of bacterial dehydrin gene inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Nadir Zaman KhanDepartment of Biotechnology, University of Malakand, Chakdara, Lower Dir, Pakistan.
Shahzadi LalDepartment of Biotechnology, University of Malakand, Chakdara, Lower Dir, Pakistan.
Waqar AliDepartment of Biotechnology, University of Malakand, Chakdara, Lower Dir, Pakistan.
Muhammad AasimDepartment of Biotechnology, University of Malakand, Chakdara, Lower Dir, Pakistan.
Saqib MumtazDepartment of Biosciences, COMSAT University, Islamabad, Pakistan.
Atif KamilDepartment of Biotechnology, Abdul Wali Khan University Mardan, Pakistan.
Noor Shad BibiDepartment of Biochemistry, Abdul Wali Khan University Mardan, Pakistan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlant growth, reproduction and yields are severely damaged under adverse environmental stresses. These stresses can be either biotic or abiotic, and many stress related proteins are expressed in response to these stresses. Among these proteins dehydrins are reported to have a role primarily in the abiotic stresses. Dehydrins are very diverse proteins and a uniform annotation system is needed for their functional characterization in the future research.

objectivesThe aim of the present work is to identify, classify and analyze the expression of dehydrin proteins under different biotic and abiotic stresses in the selected plant species by using different computational tools. MATERIALS AND

methodsProsite database is used for dehydrin proteins identification, and to conform the location of conserved motifs in selected plant species. The dehydrins extracted from uniprot database were annotated, based on the ensemble plant gene id. Subcellular localization was predicted using PSI predictor tool. Dehydrin expression analyses were retrieved form the genevestigator tool.

resultsDehydrins were annotated on the basis of dehydrin gene locus and conserved motifs available in different domain databases. Dehydrins were identified and annotated in

conclusionsDehydrins are diverse proteins and a uniform classification is introduced for their better characterization. The distribution of dehydrins in different tissues and developmental stages suggest an important function throughout plant growth cycle. It has also been concluded that dehydrins expressed particularly in drought, cold and salt stresses, and may have limited role in heat, anoxia, heavy-metal and biotic stresses as well.

Indexed as

BioinformaticsDehydrinsPlant speciesStresses

Identifiers

PMID34056027
PMCPMC8148643

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