Evidence map›Paper›PMID 34054824›Full record

ArticleFrontiers in immunology2021

Multicohort Analysis Identifies Monocyte Gene Signatures to Accurately Monitor Subset-Specific Changes in Human Diseases.

Francesco Vallania, Liron Zisman, Claudia Macaubas, Shu-Chen Hung, Narendiran Rajasekaran, Sonia Mason, Jonathan Graf, Mary Nakamura, Elizabeth D Mellins, Purvesh Khatri

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Monocyte-Amplified Transcriptional Signatures of Human Diseases.bioRxiv : the preprint server for biology · 2026
    Article
  2. Peripheral complement C4 protein in schizophrenia: Association with gene copy number and immune cell subtypes.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. The role of monocytes in thrombotic diseases: a review.Frontiers in cardiovascular medicine · 2023
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Francesco VallaniaInstitute for Immunity, Transplantation and Infection, School of Medicine, Stanford University, Stanford, CA, United States.
Liron ZismanInstitute for Immunity, Transplantation and Infection, School of Medicine, Stanford University, Stanford, CA, United States.
Claudia MacaubasDepartment of Pediatrics, Program in Immunology, School of Medicine, Stanford University, Stanford, CA, United States.
Shu-Chen HungDepartment of Pediatrics, Program in Immunology, School of Medicine, Stanford University, Stanford, CA, United States.
Narendiran RajasekaranDepartment of Pediatrics, Program in Immunology, School of Medicine, Stanford University, Stanford, CA, United States.
Sonia MasonDepartment of Pediatrics, Program in Immunology, School of Medicine, Stanford University, Stanford, CA, United States.
Jonathan GrafDepartment of Medicine, University of California San Francisco, San Francisco, CA, United States.
Mary NakamuraDepartment of Medicine, University of California San Francisco, San Francisco, CA, United States.
Elizabeth D MellinsDepartment of Pediatrics, Program in Immunology, School of Medicine, Stanford University, Stanford, CA, United States.
Purvesh KhatriInstitute for Immunity, Transplantation and Infection, School of Medicine, Stanford University, Stanford, CA, United States.
Stanford University · USUniversity of California, San Francisco · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Translational Incubator CoreU19AI109662 · NIAID · STANFORD UNIVERSITY · PI GLENN, JEFFREY S · 2014 to 2019
$28.6M
Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
NIAID NIH HHS R01 AI125197NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI109662
6 · The paper itself

Abstract

Monocytes are crucial regulators of inflammation, and are characterized by three distinct subsets in humans, of which classical and non-classical are the most abundant. Different subsets carry out different functions and have been previously associated with multiple inflammatory conditions. Dissecting the contribution of different monocyte subsets to disease is currently limited by samples and cohorts, often resulting in underpowered studies and poor reproducibility. Publicly available transcriptome profiles provide an alternative source of data characterized by high statistical power and real-world heterogeneity. However, most transcriptome datasets profile bulk blood or tissue samples, requiring the use of

Indexed as

BiomarkersTranscriptomeCell PlasticityComputational BiologyDisease SusceptibilityFlow CytometryGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHomeostasisHumansImmunophenotypingMonocytesSignal TransductionBiomarkersflow cytometry markersgene expressionGene signaturesmonocyte subsetsSystems Immunology

Identifiers

PMID34054824
PMCPMC8160521
OpenAlexW3163570556

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.