Evidence map›Paper›PMID 34052860›Full record

ArticleEuropean biophysics journal : EBJ2021

Molecular dynamics simulation study of the positioning and dynamics of α-tocopherol in phospholipid bilayers.

Sepideh Kavousi, Brian R Novak, Xinjie Tong, Dorel Moldovan

Open access · greenAbstract read
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In one paragraph

Article in European biophysics journal : EBJ, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sepideh KavousiDepartment of Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Brian R NovakDepartment of Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Xinjie TongDepartment of Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA.
Dorel MoldovanDepartment of Mechanical and Industrial Engineering, Louisiana State University, Baton Rouge, LA, 70803, USA. dmoldo1@lsu.edu.ORCID http://orcid.org/0000-0001-7850-4207
Louisiana State University · US

Funding

National Science Foundation OIA-1632854U.S. Department of Agriculture 2009-35603-05055
6 · The paper itself

Abstract

Using molecular dynamics simulations, we investigate the interaction of α-tocopherol (α-toc) with dipalmitoylphosphatidylcholine (DPPC), dimyristoylphosphatidylcholine (DMPC), palmitoyloleoylphosphatidylcholine (POPC), and palmitoyloleoylphosphatidylethanolamine (POPE) lipid bilayers. The goal is to develop a better understanding of the positioning and orientation of α-toc inside the bilayers; properties of significant relevance to α-toc anti-oxidant activity. We investigated bilayer systems with 128 lipids in the presence of either single or 14 α-toc molecules. The single α-toc bilayer systems were investigated via biased MD simulations in which the potential of mean force (PMF) and diffusivity were obtained as functions of the distance between α-toc head group and bilayer center. The higher α-toc concentration systems were investigated with unbiased MD simulations. For all four bilayers at both concentrations, the simulations show that the most probable location of the α-toc hydroxyl group is just below the lipid carbonyl group. Overall, the simulation results are in good agreement with existing experimental data except for the DMPC bilayer system for which some experiments predict α-toc to be located closer to bilayer center. The flip-flop frequency calculated shows that the α-toc flip-flop rate is sensitive to bilayer lipid type. In particular, α-toc has a much lower flip-flop rate in a POPE bilayer compared to the three PC lipid bilayers due to the smaller area per lipid in the POPE bilayer. For DMPC and POPC, the α-toc flip-flop rates are significantly higher at higher α-toc concentration and this appears to be related to the local structural disruption caused by α-toc clusters spanning the bilayer.

Indexed as

Molecular Dynamics SimulationPhospholipidsalpha-TocopherolDimyristoylphosphatidylcholineLipid Bilayersalpha-TocopherolDimyristoylphosphatidylcholineLipid BilayersPhospholipidsLipid bilayerPotential of mean forceα-tocopherolα-tocopherol leaflet flip-flop

Identifiers

PMID34052860
OpenAlexW3165522974

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.