Evidence map›Paper›PMID 34050968›Full record

ArticleJournal of pineal research2021

A classification approach to estimating human circadian phase under circadian alignment from actigraphy and photometry data.

Lindsey S Brown, Melissa A St Hilaire, Andrew W McHill, Andrew J K Phillips, Laura K Barger, Akane Sano, Charles A Czeisler, Francis J Doyle, Elizabeth B Klerman

Open access · greenAbstract read
In one paragraph

Article in Journal of pineal research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
  3. HairTime: A noninvasive assay for estimating circadian phase from a single hair sample.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Observational
  11. Article
  12. Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Lindsey S BrownHarvard John A. Paulson School of Engineering and Applied Sciences, Allston, MA, USA.ORCID https://orcid.org/0000-0002-9387-1387
Melissa A St HilaireDivision of Sleep Medicine, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-5700-8391
Andrew W McHillDivision of Sleep Medicine, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-9428-6884
Andrew J K PhillipsTurner Institute for Brain and Mental Health, School of Psychological Science, Monash University, Clayton, Vic., Australia.ORCID https://orcid.org/0000-0003-1156-7056
Laura K BargerDivision of Sleep Medicine, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0001-8547-7331
Akane SanoAffective Computing Group, Media Lab, Massachusetts Institute of Technology, Cambridge, MA, USA.ORCID https://orcid.org/0000-0003-4484-8946
Charles A CzeislerDivision of Sleep Medicine, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-7408-1849
Francis J DoyleHarvard John A. Paulson School of Engineering and Applied Sciences, Allston, MA, USA.ORCID https://orcid.org/0000-0002-3293-9114
Elizabeth B KlermanDivision of Sleep Medicine, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-7402-3171
Brigham and Women's Hospital · USHarvard University · USMassachusetts Institute of Technology · USMonash University · AU

Funding

Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
TRANSPLANTATION ANALYSIS OF CIRCADIAN RHYTHMS AND AGINGP01AG009975 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI CZEISLER, CHARLES A · 1991 to 2018
$23.1M
TRAINING IN SLEEP, CIRCADIAN &RESPIRATORY NEUROBIOLOGYT32HL007901 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI Charles A Czeisler · 1998 to 2026
$18.5M
Treatment of Circadian Disruption from Shiftwork in Older AdultsR01AG044416 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI DUFFY, JEANNE F · 2013 to 2022
$4.3M
Impact of lifting work hour restrictions on first-year resident safety, health and well-beingR01OH011773 · OH · BRIGHAM AND WOMEN'S HOSPITAL · PI BARGER, LAURA K. · 2019 to 2022
$2.9M
Multi-scale modeling of sleep behaviors in social networksR01GM105018 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI CZEISLER, CHARLES A, KLERMAN, ELIZABETH B. · 2013 to 2017
$2.4M
Sleep Duration Required to Restore Performance during Chronic Sleep RestrictionK24HL105664 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI KLERMAN, ELIZABETH B. · 2010 to 2019
$1.8M
Integration of sleep/wake network models across multiple temporal and spatial scaR00HL119618 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI PHILLIPS, ANDREW JOHN · 2015 to 2017
$742k
Uncovering Circadian Mechanisms of Poor Cardiometabolic HealthK01HL146992 · NHLBI · OREGON HEALTH & SCIENCE UNIVERSITY · PI MCHILL, ANDREW WILLIAM · 2019 to 2022
$669k
Urine metabolomics to estimate internal clock timeR21NR018974 · NINR · BRIGHAM AND WOMEN'S HOSPITAL · PI ST HILAIRE, MELISSA APRIL · 2019 to 2020
$492k
Influence of Meal Timing and Sleep Variability on Macronutrient Intake and Body Composition in College UndergraduatesF32DK107146 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI MCHILL, ANDREW WILLIAM · 2016 to 2017
$58k
ACL HHS R01OH011773Harvard Catalyst and NIH 1UL1TR001102MIT Media LabNASA 80NSSC20K0576NCATS NIH HHS UL1 TR001102NEC CorporationNHLBI NIH HHS K01 HL146992NHLBI NIH HHS K24 HL105664NHLBI NIH HHS R00 HL119618NHLBI NIH HHS T32 HL007901NIA NIH HHS P01 AG009975NIA NIH HHS R01 AG044416NIDDK NIH HHS F32 DK107146NIGMS NIH HHS R01 GM105018NIH HHS F32DK107146NIH HHS K01HL146992NIH HHS K24HL105664NIH HHS P01AG009975NIH HHS R00HL119618NIH HHS R01GM105018NIH HHS R21-NR018974NIH HHS T32-HL007901NINR NIH HHS R21 NR018974NIOSH CDC HHS R01 OH011773Samsung
6 · The paper itself

Abstract

The time of dim light melatonin onset (DLMO) is the gold standard for circadian phase assessment in humans, but collection of samples for DLMO is time and resource-intensive. Numerous studies have attempted to estimate circadian phase from actigraphy data, but most of these studies have involved individuals on controlled and stable sleep-wake schedules, with mean errors reported between 0.5 and 1 hour. We found that such algorithms are less successful in estimating DLMO in a population of college students with more irregular schedules: Mean errors in estimating the time of DLMO are approximately 1.5-1.6 hours. We reframed the problem as a classification problem and estimated whether an individual's current phase was before or after DLMO. Using a neural network, we found high classification accuracy of about 90%, which decreased the mean error in DLMO estimation-identifying the time at which the switch in classification occurs-to approximately 1.3 hours. To test whether this classification approach was valid when activity and circadian rhythms are decoupled, we applied the same neural network to data from inpatient forced desynchrony studies in which participants are scheduled to sleep and wake at all circadian phases (rather than their habitual schedules). In participants on forced desynchrony protocols, overall classification accuracy dropped to 55%-65% with a range of 20%-80% for a given day; this accuracy was highly dependent upon the phase angle (ie, time) between DLMO and sleep onset, with the highest accuracy at phase angles associated with nighttime sleep. Circadian patterns in activity, therefore, should be included when developing and testing actigraphy-based approaches to circadian phase estimation. Our novel algorithm may be a promising approach for estimating the onset of melatonin in some conditions and could be generalized to other hormones.

Indexed as

Neural Networks, ComputerActigraphyAdultCircadian RhythmFemaleHumansMaleMelatoninPhotometryMelatoninactigraphybiological clockscircadian rhythmclassificationmachine learningmelatoninshift-work

Identifiers

PMID34050968
PMCPMC8474125
OpenAlexW3164208428

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.