Evidence map›Paper›PMID 34050358›Full record

ArticleAmerican journal of clinical pathology2021

Use of the Xpert Breast Cancer STRAT4 for Biomarker Evaluation in Tissue Processed in a Developing Country.

Marcellin Mugabe, Kenneth E Ho, Deo Ruhangaza, Dan Milner, Belson Rugwizangoga, Victor C Chu, Natalie C Wu, Annaliza Rizo, Jodi M Weidler, Wendy Wong and 2 more

Open access · hybridAbstract read
In one paragraph

Article in American journal of clinical pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Evaluation ofCancers · 2023
    Article
  5. Article
  6. XPERTEcancermedicalscience · 2023
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Marcellin MugabeWindhoek Central Hospital, Windhoek, Namibia.
Kenneth E HoDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Deo RuhangazaButaro Cancer Center of Excellence, Butaro, Rwanda.
Dan MilnerAmerican Society for Clinical Pathology, Chicago, IL, USA.
Belson RugwizangogaUniversity of Rwanda, School of Medicine and Pharmacy, Kigali, Rwanda.ORCID 0000-0001-6941-7320
Victor C ChuDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Natalie C WuDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Annaliza RizoDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Jodi M WeidlerDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Wendy WongDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Michael BatesDivision of Oncology Research & Development, Cepheid, Sunnyvale, CA, USA.
Jane E BrockDepartment of Pathology, Brigham and Women's Hospital, Boston, MA, USA.
American Society for Clinical Pathology · USBrigham and Women's Hospital · USNational Art Gallery of Namibia · NAUniversity of Rwanda · RW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesBreast cancer immunohistochemistry (IHC) biomarker testing is limited in low-resource settings, and an alternative solution is needed. A point-of-care mRNA STRAT4 breast cancer assay for ESR1, PGR, ERBB2, and MKi67, for use on the GeneXpert platform, has been recently validated on tissues from internationally accredited laboratories, showing excellent concordance with IHC.

methodsWe evaluated STRAT4/IHC ESR1/estrogen receptor (ER), ERBB2/human epidermal growth factor receptor 2 (HER2) concordance rates of 150 breast cancer tissues processed in Rwanda, with undocumented cold ischemic and fixation time.

resultsAssay fail/indeterminate rate was 2.6% for ESR1 and ERBB2. STRAT4 agreement with ER IHC was 92.5% to 93.3% and 97.8% for HER2, for standard (1x) and concentrated (4x) reagent-conserving protocols, respectively. Eleven of 12 discordant ER/ESR1 cases were ESR1- negative/IHC-positive. These had low expression of ER by IHC in mostly very small tumor areas tested (7/12; <25 mm2). In two of three discordant HER2 cases, the STRAT4-ERBB2 result correlated with the subsequent fluorescence in situ hybridization (FISH) result. STRAT4-ERBB2 results in 9 of 10 HER2-IHC equivocal cases were concordant with FISH.

conclusionsThe STRAT4 assay is an alternative for providing quality-controlled breast cancer biomarker data in laboratories unable to provide quality and/or cost-efficient IHC services.

Indexed as

Biomarkers, TumorBreast NeoplasmsDeveloping CountriesFemaleHumansMultiplex Polymerase Chain ReactionRNA, MessengerRwandaBiomarkers, TumorRNA, MessengerBreast cancer assaysERBB2ESR1Estrogen receptorGeneXpertHuman epidermal growth factor receptor 2LMICmRNASTRAT4

Identifiers

PMID34050358
PMCPMC8512210
OpenAlexW3165821801

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.