Evidence map›Paper›PMID 34050165›Full record

ArticleNature communications2021

Structures of the human LONP1 protease reveal regulatory steps involved in protease activation.

Mia Shin, Edmond R Watson, Albert S Song, Jeffrey T Mindrebo, Scott J Novick, Patrick R Griffin, R Luke Wiseman, Gabriel C Lander

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
4.3field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 80 citations in OpenAlex.

  1. Article
  2. Regulation of cellular proteostasis via mitochondrial protein import.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2026
    Review
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Molecular mechanisms of mitochondrial AAA+ proteases.The Journal of biological chemistry · 2026
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Substrate-dependent activation of LONP1 informs on proteolytic regulation and ATPase motor function.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Mia ShinDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, USA.
Edmond R WatsonDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, USA.
Albert S SongDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, USA.ORCID 0000-0003-3176-6829
Jeffrey T MindreboDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, USA.
Scott J NovickDepartment of Molecular Medicine, Scripps Research, Jupiter, FL, USA.
Patrick R GriffinDepartment of Molecular Medicine, Scripps Research, Jupiter, FL, USA.ORCID 0000-0002-3404-690X
R Luke WisemanDepartment of Molecular Medicine, Scripps Research, La Jolla, CA, USA. wiseman@scripps.edu.ORCID 0000-0001-9287-6840
Gabriel C LanderDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, CA, USA. glander@scripps.edu.ORCID 0000-0003-4921-1135
Scripps Institution of Oceanography · USScripps Research Institute · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007198 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHI, NEIL C, INSEL, PAUL A · 1985 to 2024
$29.3M
IMPACTING MITOCHONDRIAL FUNCTION THROUGH ALTERED PROTEASE ACTIVITYR01NS095892 · NINDS · SCRIPPS RESEARCH INSTITUTE, THE · PI WISEMAN, ROCKLAND LUKE · 2016 to 2025
$5.3M
Defining the molecular mechanisms underlying mitochondrial proteostasisR21AG061697 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2019 to 2020
$619k
COMPUTING AND DATA STORAGE CLUSTER FOR ELECTRON MICROSCOPYS10OD021634 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2016 to 2016
$531k
Extending the limits of cryo-EM to better understand TTR misfolding and aggregationR21AG067594 · NIA · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2020 to 2021
$488k
NIA NIH HHS R21 AG061697NIA NIH HHS R21 AG067594NIGMS NIH HHS T32 GM007198NIH HHS S10 OD021634NINDS NIH HHS R01 NS095892
6 · The paper itself

Abstract

The human mitochondrial AAA+ protein LONP1 is a critical quality control protease involved in regulating diverse aspects of mitochondrial biology including proteostasis, electron transport chain activity, and mitochondrial transcription. As such, genetic or aging-associated imbalances in LONP1 activity are implicated in pathologic mitochondrial dysfunction associated with numerous human diseases. Despite this importance, the molecular basis for LONP1-dependent proteolytic activity remains poorly defined. Here, we solved cryo-electron microscopy structures of human LONP1 to reveal the underlying molecular mechanisms governing substrate proteolysis. We show that, like bacterial Lon, human LONP1 adopts both an open and closed spiral staircase orientation dictated by the presence of substrate and nucleotide. Unlike bacterial Lon, human LONP1 contains a second spiral staircase within its ATPase domain that engages substrate as it is translocated toward the proteolytic chamber. Intriguingly, and in contrast to its bacterial ortholog, substrate binding within the central ATPase channel of LONP1 alone is insufficient to induce the activated conformation of the protease domains. To successfully induce the active protease conformation in substrate-bound LONP1, substrate binding within the protease active site is necessary, which we demonstrate by adding bortezomib, a peptidomimetic active site inhibitor of LONP1. These results suggest LONP1 can decouple ATPase and protease activities depending on whether AAA+ or both AAA+ and protease domains bind substrate. Importantly, our structures provide a molecular framework to define the critical importance of LONP1 in regulating mitochondrial proteostasis in health and disease.

Indexed as

Adenosine TriphosphateAgingATP-Dependent ProteasesBortezomibCatalytic DomainCryoelectron MicroscopyEnzyme AssaysHumansHydrolysisMitochondriaMitochondrial ProteinsModels, MolecularOxidation-ReductionProtein BindingProtein DomainsProteolysisAdenosine TriphosphateATP-Dependent ProteasesBortezomibLONP1 protein, humanMitochondrial ProteinsRecombinant Proteins

Identifiers

PMID34050165
PMCPMC8163871
OpenAlexW3164893781

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.