Evidence map›Paper›PMID 34049566›Full record

ArticleBMC research notes2021

Ethanologenesis and respiration in a pyruvate decarboxylase-deficient Zymomonas mobilis.

Reinis Rutkis, Inese Strazdina, Zane Lasa, Per Bruheim, Uldis Kalnenieks

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Investigating the role of FMicrobial cell factories · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Reinis RutkisInstitute of Microbiology and Biotechnology, University of Latvia, Riga, Latvia.
Inese StrazdinaInstitute of Microbiology and Biotechnology, University of Latvia, Riga, Latvia.
Zane LasaInstitute of Microbiology and Biotechnology, University of Latvia, Riga, Latvia.
Per BruheimDepartment of Biotechnology and Food Science, NTNU Norwegian University of Science and Technology, Trondheim, Norway.
Uldis KalnenieksInstitute of Microbiology and Biotechnology, University of Latvia, Riga, Latvia. uldis.kalnenieks@lu.lv.
University of Latvia · LVNorwegian University of Science and Technology · NO

Funding

Norway Grants 258657State Education Development Agency Republic of Latvia Latvian ERDF project 1.1.1.1/16/A/185
6 · The paper itself

Abstract

objectiveZymomonas mobilis is an alpha-proteobacterium with a rapid ethanologenic pathway, involving Entner-Doudoroff (E-D) glycolysis, pyruvate decarboxylase (Pdc) and two alcohol dehydrogenase (ADH) isoenzymes. Pyruvate is the end-product of the E-D pathway and the substrate for Pdc. Construction and study of Pdc-deficient strains is of key importance for Z. mobilis metabolic engineering, because the pyruvate node represents the central branching point, most novel pathways divert from ethanol synthesis. In the present work, we examined the aerobic metabolism of a strain with partly inactivated Pdc.

resultsRelative to its parent strain the mutant produced more pyruvate. Yet, it also yielded more acetaldehyde, the product of the Pdc reaction and the substrate for ADH, although the bulk ADH activity was similar in both strains, while the Pdc activity in the mutant was reduced by half. Simulations with the kinetic model of Z. mobilis E-D pathway indicated that, for the observed acetaldehyde to ethanol production ratio in the mutant, the ratio between its respiratory NADH oxidase and ADH activities should be significantly higher, than the measured values. Implications of this finding for the directionality of the ADH isoenzyme operation in vivo and interactions between ADH and Pdc are discussed.

Indexed as

ZymomonasAlcohol DehydrogenaseMetabolic EngineeringPyruvate DecarboxylaseRespirationAlcohol DehydrogenasePyruvate DecarboxylaseAcetaldehydeAlcohol dehydrogenasePyruvatePyruvate decarboxylaseRespiratory chainZymomonas mobilis

Identifiers

PMID34049566
PMCPMC8161578
OpenAlexW3164188084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.