Evidence map›Paper›PMID 34047637›Full record

ArticleApplied and environmental microbiology2021

Evaluation of Strain Variability in Inactivation of Campylobacter jejuni in Simulated Gastric Fluid by Using Hierarchical Bayesian Modeling.

Kento Koyama, Jukka Ranta, Kohei Takeoka, Hiroki Abe, Shige Koseki

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kento KoyamaGraduate School of Agricultural Science, Hokkaido University, Sapporo, Japan.
Jukka RantaRisk Assessment Unit, Finnish Food Authority, Helsinki, Finland.
Kohei TakeokaGraduate School of Agricultural Science, Hokkaido University, Sapporo, Japan.
Hiroki AbeGraduate School of Agricultural Science, Hokkaido University, Sapporo, Japan.
Shige KosekiGraduate School of Agricultural Science, Hokkaido University, Sapporo, Japan.
Hokkaido University · JPFinnish Food Authority · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study was conducted to quantitatively evaluate the variability of stress resistance in different strains of Campylobacter jejuni and the uncertainty of such strain variability. We developed Bayesian statistical models with multilevel analysis to quantify variability within a strain, variability between different strains, and the uncertainty associated with these estimates. Furthermore, we measured the inactivation of 11 strains of C. jejuni in simulated gastric fluid with low pH, using the Weibullian survival model. The model was first developed for separate pH conditions and then analyzed over a range of pH levels. We found that the model parameters developed under separate pH conditions exhibited a clear dependence of survival on pH. In addition, the uncertainty of the variability between different strains could be described as the joint distribution of the model parameters. The latter model, including pH dependency, accurately predicted the number of surviving cells in individual as well as multiple strains. In conclusion, variabilities and uncertainties in inactivation could be simultaneously evaluated and interpreted via a probabilistic approach based on Bayesian theory. Such hierarchical Bayesian models could be useful for understanding individual-strain variability in quantitative microbial risk assessment.

Indexed as

Bayes TheoremCampylobacter jejuniModels, TheoreticalGastric JuiceHydrogen-Ion ConcentrationMicrobial ViabilitySpecies Specificitygastric digestion processmultilevel analysisquantitative microbial risk assessmentuncertaintyvariability

Identifiers

PMID34047637
PMCPMC8315736
OpenAlexW3164265772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.