Evidence map›Paper›PMID 34045764›Full record

ArticleNature genetics2021

Radiotherapy is associated with a deletion signature that contributes to poor outcomes in patients with cancer.

Emre Kocakavuk, Kevin J Anderson, Frederick S Varn, Kevin C Johnson, Samirkumar B Amin, Erik P Sulman, Martijn P Lolkema, Floris P Barthel, Roel G W Verhaak

Open access · greenAbstract read
In one paragraph

Article in Nature genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed, 161 citations in OpenAlex.

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40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Emre KocakavukThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID http://orcid.org/0000-0003-1920-0494
Kevin J AndersonThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID http://orcid.org/0000-0002-2362-273X
Frederick S VarnThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID http://orcid.org/0000-0001-6307-016X
Kevin C JohnsonThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.ORCID http://orcid.org/0000-0003-0016-5158
Samirkumar B AminThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA.
Erik P SulmanNYU Langone Health, New York, NY, USA.ORCID http://orcid.org/0000-0003-4933-9120
Martijn P LolkemaDepartment of Medical Oncology, Erasmus MC Cancer Institute, Rotterdam, the Netherlands.ORCID http://orcid.org/0000-0003-0466-2928
Floris P BarthelThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. fbarthel@tgen.org.ORCID http://orcid.org/0000-0002-7425-4180
Roel G W VerhaakThe Jackson Laboratory for Genomic Medicine, Farmington, CT, USA. roel.verhaak@jax.org.ORCID http://orcid.org/0000-0003-2773-0436
Jackson Laboratory · USErasmus MC Cancer Institute · NLGerman Cancer Research Center · DENYU Langone Health · USTranslational Genomics Research Institute · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI Anna Karolina Palucka · 1985 to 2026
$61.9M
Genomic Biology of the Tandem Duplicator Phenotype in Mouse and Human CancersR01CA255705 · NCI · JACKSON LABORATORY · PI LIU, EDISON TAK-BUN · 2021 to 2025
$3.5M
Extrachromosomal DNA as a Targetable Mechanism in GlioblastomaR01CA237208 · NCI · YALE UNIVERSITY · PI VERHAAK, ROEL GW · 2020 to 2024
$2.5M
(PQ #4) Single cell barcoding for studies of study clonal evolution in glioblastomaR01CA190121 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SULMAN, ERIK, VERHAAK, ROEL GW · 2014 to 2017
$1.4M
Modeling Tumor Evolution in GliomaR21NS114873 · NINDS · JACKSON LABORATORY · PI VERHAAK, ROEL GW · 2019 to 2020
$520k
Genetic and Epigenetic Strategies for the Acquisition of Telomere Maintenance in Human Cancer CellsK99CA226387 · NCI · JACKSON LABORATORY · PI BARTHEL, FLORIS · 2018 to 2021
$250k
NCI NIH HHS K99 CA226387NCI NIH HHS P30 CA034196NCI NIH HHS R01 CA190121NCI NIH HHS R01 CA237208NCI NIH HHS R01 CA255705NINDS NIH HHS R21 NS114873
6 · The paper itself

Abstract

Ionizing radiation causes DNA damage and is a mainstay for cancer treatment, but understanding of its genomic impact is limited. We analyzed mutational spectra following radiotherapy in 190 paired primary and recurrent gliomas from the Glioma Longitudinal Analysis Consortium and 3,693 post-treatment metastatic tumors from the Hartwig Medical Foundation. We identified radiotherapy-associated significant increases in the burden of small deletions (5-15 bp) and large deletions (20+ bp to chromosome-arm length). Small deletions were characterized by a larger span size, lacking breakpoint microhomology and were genomically more dispersed when compared to pre-existing deletions and deletions in non-irradiated tumors. Mutational signature analysis implicated classical non-homologous end-joining-mediated DNA damage repair and APOBEC mutagenesis following radiotherapy. A high radiation-associated deletion burden was associated with worse clinical outcomes, suggesting that effective repair of radiation-induced DNA damage is detrimental to patient survival. These results may be leveraged to predict sensitivity to radiation therapy in recurrent cancer.

Indexed as

DNA DamageHumansMutagenesisNeoplasm Recurrence, LocalNeoplasmsPrognosisRadiation, IonizingRadiotherapySequence Deletion

Identifiers

PMID34045764
PMCPMC8483261
OpenAlexW3164260036

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.