Evidence map›Paper›PMID 34045357›Full record

ArticleImmunoHorizons2021

Diverse Mucosal-Associated Invariant TCR Usage in HIV Infection.

Shubhanshi Trivedi, Taliman Afroz, Michael S Bennett, Kendal Angell, Fabio Barros, Racheal A Nell, Jian Ying, Adam M Spivak, Daniel T Leung

Abstract read
In one paragraph

Article in ImmunoHorizons, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  4. Article
  5. Frontiers in immunology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Shubhanshi TrivediDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and Shubhanshi.Trivedi@hsc.utah.edu daniel.leung@utah.edu.ORCID 0000-0001-6891-2290
Taliman AfrozDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Michael S BennettDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.ORCID 0000-0003-1040-5186
Kendal AngellDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Fabio BarrosDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Racheal A NellDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Jian YingDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Adam M SpivakDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and.
Daniel T LeungDivision of Infectious Disease, Department of Internal Medicine, University of Utah, Salt Lake City, UT; and Shubhanshi.Trivedi@hsc.utah.edu daniel.leung@utah.edu.ORCID 0000-0001-8401-0801

Funding

Utah Center for Clinical and Translational ScienceUL1TR002538 · NCATS · UNIVERSITY OF UTAH · PI HESS, RACHEL, MAJERSIK, JENNIFER JUHL · 2018 to 2022
$26.0M
Mucosal associated invariant T (MAIT) cells in Vibrio cholerae infection and vaccinationR01AI130378 · NIAID · UNIVERSITY OF UTAH · PI LEUNG, DANIEL TED · 2017 to 2021
$1.8M
Univ of Utah Cell Sorter for Flow Cytometry CoreS10RR026802 · NCRR · UNIVERSITY OF UTAH · PI GREEN, WAYNE FRANCIS · 2010 to 2010
$500k
NCATS NIH HHS UL1 TR002538NCRR NIH HHS S10 RR026802NIAID NIH HHS R01 AI130378
6 · The paper itself

Abstract

Mucosal-associated invariant T (MAIT) cells are innate-like T cells that specifically target bacterial metabolites but are also identified as innate-like sensors of viral infection. Individuals with chronic HIV-1 infection have lower numbers of circulating MAIT cells compared with healthy individuals, yet the features of the MAIT TCR repertoire are not well known. We isolated and stimulated human PBMCs from healthy non-HIV-infected donors (HD), HIV-infected progressors on antiretroviral therapy, and HIV-infected elite controllers (EC). We sorted MAIT cells using flow cytometry and used a high-throughput sequencing method with bar coding to link the expression of TCRα, TCRβ, and functional genes of interest at the single-cell level. We show differential patterns of MAIT TCR usage among the groups. We observed expansions of certain dominant MAIT clones in HIV-infected individuals upon

Indexed as

AdultAgedAnti-HIV AgentsDisease ProgressionElite ControllersEscherichia coliFemaleFlow CytometryHigh-Throughput Nucleotide SequencingHIV InfectionsHumansInterferon-gammaLeukocytes, MononuclearMaleMiddle AgedMucosal-Associated Invariant T CellsAnti-HIV AgentsInterferon-gammaReceptors, Antigen, T-Cell

Identifiers

PMID34045357
PMCPMC10563122

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.