Evidence map›Paper›PMID 34044801›Full record

Observational studyBMC cancer2021

Robust expression of LINE-1 retrotransposon encoded proteins in oral squamous cell carcinoma.

Koel Mukherjee, Debpali Sur, Abhijeet Singh, Sandhya Rai, Neeladrisingha Das, Rakshanya Sekar, Srinu Narindi, Vandana Kumar Dhingra, Bhinyaram Jat, K V Vinu Balraam and 2 more

Open access · goldAbstract readObservational Study
In one paragraph

Observational study in BMC cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.1field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Koel MukherjeeDepartment of Biotechnology, IIT Roorkee, Roorkee, Uttarakhand, India.
Debpali Sur *Department of Biotechnology, IIT Roorkee, Roorkee, Uttarakhand, India.
Abhijeet Singh *Department of Head-Neck Surgery and Oncology, AIIMS Rishikesh, Rishikesh, Uttarakhand, India.
Sandhya RaiDepartment of Biotechnology, IIT Roorkee, Roorkee, Uttarakhand, India.
Neeladrisingha DasDepartment of Biotechnology, IIT Roorkee, Roorkee, Uttarakhand, India.
Rakshanya SekarSchool of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
Srinu NarindiMilitary Hospital, Roorkee, Uttarakhand, India.
Vandana Kumar DhingraDepartment of Head-Neck Surgery and Oncology, AIIMS Rishikesh, Rishikesh, Uttarakhand, India.
Bhinyaram JatDepartment of Head-Neck Surgery and Oncology, AIIMS Rishikesh, Rishikesh, Uttarakhand, India.
K V Vinu BalraamMilitary Hospital, Roorkee, Uttarakhand, India.
Satya Prakash AgarwalDepartment of Head-Neck Surgery and Oncology, AIIMS Rishikesh, Rishikesh, Uttarakhand, India.
Prabhat Kumar MandalDepartment of Biotechnology, IIT Roorkee, Roorkee, Uttarakhand, India. prabhat.mandal@bt.iitr.ac.in.
Indian Institute of Technology Roorkee · INAll India Institute of Medical Sciences Raipur · INAll India Institute of Medical Sciences RishikeshVellore Institute of Technology University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOral Squamous Cell Carcinoma (OSCC) results from a series of genetic alteration in squamous cells. This particular type of cancer considers one of the most aggressive malignancies to control because of its frequent local invasions to the regional lymph node. Although several biomarkers have been reported, the key marker used to predict the behavior of the disease is largely unknown. Here we report Long INterpersed Element-1 (LINE1 or L1) retrotransposon activity in post-operative oral cancer samples. L1 is the only active retrotransposon occupying around 17% of the human genome with an estimated 500,000 copies. An active L1 encodes two proteins (L1ORF1p and L1ORF2p); both of which are critical in the process of retrotransposition. Several studies report that the L1 retrotransposon is highly active in many cancers. L1 activity is generally determined by assaying L1ORF1p because of its high expression and availability of the antibody. However, due to its lower expression and unavailability of a robust antibody, detection of L1ORF2p has been limited. L1ORF2p is the crucial protein in the process of retrotransposition as it provides endonuclease and reverse transcriptase (RT) activity.

methodsImmunohistochemistry and Western blotting were performed on the post-operative oral cancer samples and murine tissues.

resultsUsing in house novel antibodies against both the L1 proteins (L1ORF1p and L1ORF2p), we found L1 retrotransposon is extremely active in post-operative oral cancer tissues. Here, we report a novel human L1ORF2p antibody generated using an 80-amino-acid stretch from the RT domain, which is highly conserved among different species. The antibody detects significant L1ORF2p expression in human oral squamous cell carcinoma (OSCC) samples and murine germ tissues.

conclusionsWe report exceptionally high L1ORF1p and L1ORF2p expression in post-operative oral cancer samples. The novel L1ORF2p antibody reported in this study will serve as a useful tool to understand why L1 activity is deregulated in OSCC and how it contributes to the progression of this particular cancer. Cross-species reactivity of L1ORF2p antibody due to the conserved epitope will be useful to study the retrotransposon biology in mice and rat germ tissues.

Indexed as

Amino Acid SequenceAnimalsAntigens, NeoplasmHEK293 CellsHumansLong Interspersed Nucleotide ElementsMiceMouth MucosaMouth NeoplasmsOpen Reading FramesRatsSequence AlignmentSquamous Cell Carcinoma of Head and NeckAntigens, NeoplasmCancer and L1 retrotransposonL1ORF1p antibodyL1ORF2p antibodyL1 retrotransposonOSCC and L1 retrotransposon

Identifiers

PMID34044801
PMCPMC8161598
OpenAlexW3165881289

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.