Evidence map›Paper›PMID 34044778›Full record

ArticleBMC genomics2021

Transcriptomic insights into the effects of CytCo, a novel nematotoxic protein, on the pine wood nematode Bursaphelenchus xylophilus.

Ye Chen, Xiang Zhou, Kai Guo, Sha-Ni Chen, Xiu Su

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Identification and Transcriptome Analysis ofInternational journal of molecular sciences · 2024
    Article
  2. Article
  3. Article
  4. The novel nematicide chiricanine A suppressesFrontiers in plant science · 2023
    Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ye Chen *Collaborative Innovation Center of Zhejiang Green Pesticide, National Joint Local Engineering Laboratory for High-Efficient Preparation of Biopesticide, School of Forestry and Biotechnology, Zhejiang A&F University, 311300, Hangzhou, People's Republic of China.
Xiang Zhou *Collaborative Innovation Center of Zhejiang Green Pesticide, National Joint Local Engineering Laboratory for High-Efficient Preparation of Biopesticide, School of Forestry and Biotechnology, Zhejiang A&F University, 311300, Hangzhou, People's Republic of China.
Kai GuoCollaborative Innovation Center of Zhejiang Green Pesticide, National Joint Local Engineering Laboratory for High-Efficient Preparation of Biopesticide, School of Forestry and Biotechnology, Zhejiang A&F University, 311300, Hangzhou, People's Republic of China. kaiguo@zafu.edu.cn.
Sha-Ni ChenCollaborative Innovation Center of Zhejiang Green Pesticide, National Joint Local Engineering Laboratory for High-Efficient Preparation of Biopesticide, School of Forestry and Biotechnology, Zhejiang A&F University, 311300, Hangzhou, People's Republic of China.
Xiu SuCollaborative Innovation Center of Zhejiang Green Pesticide, National Joint Local Engineering Laboratory for High-Efficient Preparation of Biopesticide, School of Forestry and Biotechnology, Zhejiang A&F University, 311300, Hangzhou, People's Republic of China.
Zhejiang A & F University · CN

Funding

National Natural Science Foundation of China 31870637、31200487Zhejiang Key Research Plan in China 2016C32016、2019C02024
6 · The paper itself

Abstract

backgroundThe pine wood nematode Bursaphelenchus xylophilus is a destructive pest of Pinus trees worldwide and lacks effective control measures. Screening for nematotoxic proteins has been undertaken to develop new strategies for nematode control.

resultsThe results of the present study provided initial insights into the responses of B. xylophilus exposed to a nematotoxic cytolytic-like protein (CytCo) based on transcriptome profiling. A large set of differentially expressed genes (DEGs = 1265) was found to be related to nematode development, reproduction, metabolism, motion, and immune system. In response to the toxic protein, B. xylophilus upregulated DEGs encoding cuticle collagens, transporters, and cytochrome P450. In addition, many DEGs related to cell death, lipid metabolism, major sperm proteins, proteinases/peptidases, phosphatases, kinases, virulence factors, and transthyretin-like proteins were downregulated. Gene Ontology enrichment analysis showed that the CytCo treatment substantially affected DEGs involved in muscle contraction, lipid localization, and the mitogen-activated protein kinase cascade. The pathway richness of the Kyoto Encyclopedia of Genes and Genomes showed that the DEGs were concentrated in lysosomes and involved in fatty acid degradation. Weighted co-expression network analysis indicated that the hub genes affected by CytCo were associated with the nematode cuticular collagen.

conclusionsThese results showed that CytCo toxin interferes with gene expression to exert multiple nematotoxic effects, thereby providing insights into its potential use in pine wood nematode control.

Indexed as

PinusRhabditidaTylenchidaAnimalsGene Expression ProfilingPlant DiseasesTranscriptomeXylophilusCyt δ-endotoxinEntomophthoromycotinaNematotoxicityPlant parasitic nematodeTranscriptome profiling

Identifiers

PMID34044778
PMCPMC8157652
OpenAlexW3163967244

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.