Evidence map›Paper›PMID 34043736›Full record

ArticlePLoS pathogens2021

The RyfA small RNA regulates oxidative and osmotic stress responses and virulence in uropathogenic Escherichia coli.

Hicham Bessaiah, Pravil Pokharel, Hamza Loucif, Merve Kulbay, Charles Sasseville, Hajer Habouria, Sébastien Houle, Jacques Bernier, Éric Massé, Julien Van Grevenynghe and 1 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. A small RNA fromVirulence · 2025
    Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Urinary Tract Infections Caused by UropathogenicInternational journal of molecular sciences · 2023
    Review
  11. The Klebsiella pneumoniaeInfection and immunity · 2023
    Article
  12. Article
  13. Simulated Colonic Fluid Replicates theInfection and immunity · 2022
    Article
  14. Article
  15. Key players in regulatory RNA realm of bacteria.Biochemistry and biophysics reports · 2022
    Review
  16. Involvement ofInternational journal of molecular sciences · 2022
    Article
  17. Three Microbial Musketeers of the Seas:International journal of molecular sciences · 2022
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Hicham BessaiahINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0001-7333-2581
Pravil PokharelINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0001-6214-9407
Hamza LoucifINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0002-2646-524X
Merve KulbayINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0003-2756-3973
Charles SassevilleDepartment of Biochemistry, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec, Canada.
Hajer HabouriaINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.
Sébastien HouleINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0002-3690-770X
Jacques BernierINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.ORCID 0000-0002-0594-5922
Éric MasséDepartment of Biochemistry, RNA Group, Université de Sherbrooke, Sherbrooke, Quebec, Canada.ORCID 0000-0002-5253-1415
Julien Van GrevenyngheINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.
Charles M DozoisINRS-Centre Armand-Frappier Santé Biotechnologie, Laval, Québec, Canada.

Funding

CIHR
6 · The paper itself

Abstract

Urinary tract infections (UTIs) are a common bacterial infectious disease in humans, and strains of uropathogenic Escherichia coli (UPEC) are the most frequent cause of UTIs. During infection, UPEC must cope with a variety of stressful conditions in the urinary tract. Here, we demonstrate that the small RNA (sRNA) RyfA of UPEC strains is required for resistance to oxidative and osmotic stresses. Transcriptomic analysis of the ryfA mutant showed changes in expression of genes associated with general stress responses, metabolism, biofilm formation and genes coding for cell surface proteins. Inactivation of ryfA in UPEC strain CFT073 decreased urinary tract colonization in mice and the ryfA mutant also had reduced production of type 1 and P fimbriae (pili), adhesins which are known to be important for UTI. Furthermore, loss of ryfA also reduced UPEC survival in human macrophages. Thus, ryfA plays a key regulatory role in UPEC adaptation to stress, which contributes to UTI and survival in macrophages.

Indexed as

Adaptation, PhysiologicalAdhesins, BacterialAnimalsBiofilmsEscherichia coli InfectionsFimbriae, BacterialGene Expression ProfilingHumansMacrophagesMiceOsmoregulationOxidative StressRNA, BacterialRNA, Small UntranslatedSequence DeletionUrinary Tract InfectionsAdhesins, BacterialRNA, BacterialRNA, Small Untranslated

Identifiers

PMID34043736
PMCPMC8205139

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.