Evidence map›Paper›PMID 34043649›Full record

ArticlePloS one2021

Salt stress and salt shock differently affect DNA methylation in salt-responsive genes in sugar beet and its wild, halophytic ancestor.

Monika Skorupa, Joanna Szczepanek, Justyna Mazur, Krzysztof Domagalski, Andrzej Tretyn, Jarosław Tyburski

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Insights into the Epigenetic Basis of Plant Salt Tolerance.International journal of molecular sciences · 2024
    Review
  6. Article
  7. Review
  8. Article
  9. Characteristic of the Ascorbate Oxidase Gene Family inInternational journal of molecular sciences · 2022
    Article
  10. Review
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Monika SkorupaCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.ORCID 0000-0003-1868-5370
Joanna SzczepanekCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.ORCID 0000-0002-4287-5353
Justyna MazurCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Krzysztof DomagalskiCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Andrzej TretynCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Jarosław TyburskiCentre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University, Toruń, Poland.
Nicolaus Copernicus University · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Here we determined the impact of salt shock and salt stress on the level of DNA methylation in selected CpG islands localized in promoters or first exons of sixteen salt-responsive genes in beets. Two subspecies differing in salt tolerance were subjected for analysis, a moderately salt-tolerant sugar beet Beta vulgaris ssp. vulgaris cv. Huzar and a halophytic beet, Beta vulgaris ssp. maritima. The CpG island methylation status was determined. All target sequences were hyper- or hypomethylated under salt shock and/or salt stress in one or both beet subspecies. It was revealed that the genomic regions analyzed were highly methylated in both, the salt treated plants and untreated controls. Methylation of the target sequences changed in a salt-dependent manner, being affected by either one or both treatments. Under both shock and stress, the hypomethylation was a predominant response in sugar beet. In Beta vulgaris ssp. maritima, the hypermethylation occurred with higher frequency than hypomethylation, especially under salt stress and in the promoter-located CpG sites. Conversely, the hypomethylation of the promoter-located CpG sites predominated in sugar beet plants subjected to salt stress. This findings suggest that DNA methylation may be involved in salt-tolerance and transcriptomic response to salinity in beets.

Indexed as

DNA MethylationGene Expression Regulation, PlantBeta vulgarisCpG IslandsEpigenesis, GeneticGenes, PlantGenomicsPlant LeavesPromoter Regions, GeneticSalinitySaltsSalt ToleranceSalt-Tolerant PlantsSalts

Identifiers

PMID34043649
PMCPMC8158878
OpenAlexW3164130115

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.